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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3160050 |
| Transcript ID | Lj1g3v3160050.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: chitinase-like protein 2-like [Cicer arietinum] gi|502102342|ref|XP_004492044.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 27 | 27 | – | – | |
| PIRSF | 1 | 313 | 313 | 8.30E-73 | ||
| SignalP | 1 | 27 | 27 | – | – | |
| Phobius | 1 | 7 | 7 | – | – | |
| SignalP | 1 | 27 | 27 | – | – | |
| Phobius | 1 | 27 | 27 | – | – | |
| TMHMM | 7 | 25 | 19 | – | – | |
| Phobius | 8 | 19 | 12 | – | – | |
| Phobius | 20 | 27 | 8 | – | – | |
| Phobius | 28 | 321 | 294 | – | – | |
| PANTHER | 33 | 321 | 289 | 8.90E-190 | – | |
| PANTHER | 33 | 321 | 289 | 8.90E-190 | – | |
| Gene3D | 62 | 133 | 72 | 7.10E-58 | – | |
| SUPERFAMILY | 62 | 313 | 252 | 4.22E-74 | ||
| CDD | 66 | 306 | 241 | 4.75E-99 | ||
| Pfam | 70 | 295 | 226 | 2.50E-63 | ||
| Gene3D | 175 | 312 | 138 | 7.10E-58 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chitinase activity | Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Chitin catabolic process | The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. | ||
| Biological process | Cell wall macromolecule catabolic process | The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall. |
Expression pattern of Lj1g3v3160050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3160050.1, powered by CORGI.
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