Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v3182310.1

Overview

Field Value
Gene ID Lj1g3v3182310
Transcript ID Lj1g3v3182310.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF517
15 113 99 4.90E-43 –
PANTHER
PTHR10641
15 113 99 4.90E-43 –
ProSiteProfiles
PS51294
40 91 52 9.286
IPR017930
SMART
SM00717
42 89 48 3.40E-04
IPR001005
SUPERFAMILY
SSF46689
44 104 61 2.87E-10
IPR009057
CDD
cd00167
45 86 42 9.73E-04 –
Gene3D
G3DSA:1.10.10.60
45 96 52 9.50E-11
IPR009057
Pfam
PF13921
46 104 59 1.50E-11 –
ProSiteProfiles
PS50090
88 157 70 7.909
IPR017877
SMART
SM00717
92 159 68 0.073
IPR001005
Gene3D
G3DSA:1.10.10.60
97 158 62 2.30E-07
IPR009057
PANTHER
PTHR10641:SF517
133 225 93 4.90E-43 –
PANTHER
PTHR10641
133 225 93 4.90E-43 –
SUPERFAMILY
SSF46689
137 215 79 1.51E-05
IPR009057
ProSiteProfiles
PS50090
159 212 54 6.783
IPR017877
SMART
SM00717
163 214 52 65
IPR001005

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj1g3v3182310.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3182310.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.