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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3206740 |
| Transcript ID | Lj1g3v3206740.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357449185|ref|XP_003594869.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 495 | 495 | 6.60E-270 | – | |
| PANTHER | 1 | 495 | 495 | 6.60E-270 | – | |
| ProSiteProfiles | 6 | 40 | 35 | 7.07 | ||
| Pfam | 40 | 88 | 49 | 3.20E-13 | ||
| ProSiteProfiles | 41 | 75 | 35 | 9.81 | ||
| TIGRFAM | 43 | 77 | 35 | 1.10E-05 | ||
| Gene3D | 46 | 94 | 49 | 9.40E-08 | ||
| ProSiteProfiles | 76 | 110 | 35 | 10.216 | ||
| TIGRFAM | 78 | 111 | 34 | 1.40E-04 | ||
| Pfam | 107 | 137 | 31 | 6.60E-08 | ||
| ProSiteProfiles | 111 | 145 | 35 | 12.31 | ||
| TIGRFAM | 113 | 147 | 35 | 9.40E-09 | ||
| SUPERFAMILY | 115 | 290 | 176 | 7.96E-06 | ||
| Pfam | 141 | 172 | 32 | 2.60E-09 | ||
| ProSiteProfiles | 146 | 180 | 35 | 10.983 | ||
| TIGRFAM | 148 | 182 | 35 | 6.40E-08 | ||
| Pfam | 180 | 229 | 50 | 1.00E-19 | ||
| ProSiteProfiles | 181 | 215 | 35 | 13.165 | ||
| TIGRFAM | 183 | 217 | 35 | 7.90E-09 | ||
| Gene3D | 184 | 236 | 53 | 9.40E-08 | ||
| ProSiteProfiles | 216 | 250 | 35 | 11.981 | ||
| TIGRFAM | 218 | 252 | 35 | 4.50E-09 | ||
| ProSiteProfiles | 251 | 285 | 35 | 12.967 | ||
| Pfam | 251 | 299 | 49 | 2.20E-19 | ||
| TIGRFAM | 253 | 287 | 35 | 8.50E-08 | ||
| ProSiteProfiles | 286 | 320 | 35 | 12.047 | ||
| TIGRFAM | 289 | 322 | 34 | 2.70E-09 | ||
| Gene3D | 300 | 414 | 115 | 9.40E-08 | ||
| Pfam | 318 | 348 | 31 | 2.70E-11 | ||
| ProSiteProfiles | 321 | 355 | 35 | 12.233 | ||
| TIGRFAM | 323 | 352 | 30 | 3.10E-08 | ||
| SUPERFAMILY | 325 | 384 | 60 | 7.96E-06 | ||
| Pfam | 356 | 404 | 49 | 2.80E-18 | ||
| ProSiteProfiles | 356 | 390 | 35 | 12.803 | ||
| TIGRFAM | 358 | 392 | 35 | 6.80E-09 | ||
| ProSiteProfiles | 391 | 425 | 35 | 11.444 | ||
| TIGRFAM | 394 | 424 | 31 | 3.10E-05 | ||
| ProSiteProfiles | 426 | 460 | 35 | 13.866 | ||
| Pfam | 427 | 472 | 46 | 1.70E-14 | ||
| TIGRFAM | 428 | 462 | 35 | 1.30E-11 | ||
| ProSiteProfiles | 461 | 495 | 35 | 10.337 | ||
| TIGRFAM | 463 | 493 | 31 | 1.20E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v3206740.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3206740.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.