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Lj1g3v3244550.1

Overview

Field Value
Gene ID Lj1g3v3244550
Transcript ID Lj1g3v3244550.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Eukaryotic translation initiation factor [Medicago truncatula] gi|357508251|ref|XP_003624414.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23001:SF8
1 191 191 2.50E-261 –
PANTHER
PTHR23001
1 191 191 2.50E-261 –
SUPERFAMILY
SSF100966
10 101 92 2.35E-21
IPR016189
Pfam
PF01873
11 127 117 1.90E-36
IPR002735
SMART
SM00653
15 129 115 3.00E-63
IPR002735
Gene3D
G3DSA:3.30.30.50
30 72 43 3.80E-10
IPR016189
SUPERFAMILY
SSF75689
98 133 36 3.01E-07
IPR016190
MobiDBLite
mobidb-lite
144 238 95 – –
Coils
Coil
167 187 21 – –
PANTHER
PTHR23001:SF8
208 330 123 2.50E-261 –
PANTHER
PTHR23001
208 330 123 2.50E-261 –
MobiDBLite
mobidb-lite
271 314 44 – –
ProSiteProfiles
PS51363
308 465 158 26.57
IPR003307
CDD
cd11561
315 458 144 2.71E-32 –
SUPERFAMILY
SSF48371
316 459 144 6.33E-25
IPR016024
Gene3D
G3DSA:1.25.40.180
330 465 136 6.70E-26
IPR016021
PANTHER
PTHR23001:SF8
347 465 119 2.50E-261 –
PANTHER
PTHR23001
347 465 119 2.50E-261 –
SMART
SM00515
373 461 89 1.30E-31
IPR003307
Pfam
PF02020
387 465 79 1.40E-21
IPR003307

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006413
Biological process Translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
Subterm of
Part of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj1g3v3244550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3244550.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.