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Lj1g3v3244570.1

Overview

Field Value
Gene ID Lj1g3v3244570
Transcript ID Lj1g3v3244570.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: eukaryotic translation initiation factor 5-like [Glycine max] gi|356499628|ref|XP_003518639.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 307 307 1.60E-262
PANTHER 1 307 307 1.60E-262
SUPERFAMILY 11 101 91 2.75E-21
Pfam 11 127 117 7.00E-37
SMART 15 129 115 1.80E-63
Gene3D 30 72 43 3.50E-10
SUPERFAMILY 98 133 36 1.70E-07
ProSiteProfiles 282 442 161 25.839
SUPERFAMILY 289 436 148 1.38E-25
CDD 295 440 146 3.02E-37
Gene3D 309 442 134 5.10E-25
PANTHER 324 442 119 1.60E-262
PANTHER 324 442 119 1.60E-262
SMART 350 438 89 3.00E-32
Pfam 364 442 79 5.30E-21

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Biological process Translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj1g3v3244570.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3244570.1, powered by CORGI.

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