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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3329140 |
| Transcript ID | Lj1g3v3329140.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max] gi|356569101|ref|XP_003552744.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | – | – | |
| Phobius | 1 | 82 | 82 | – | – | |
| PANTHER | 2 | 622 | 621 | 0 | – | |
| PANTHER | 2 | 622 | 621 | 0 | ||
| SUPERFAMILY | 63 | 161 | 99 | 2.75E-23 | ||
| CDD | 72 | 282 | 211 | 3.80E-04 | ||
| Phobius | 83 | 101 | 19 | – | – | |
| Gene3D | 83 | 285 | 203 | 9.70E-05 | – | |
| TMHMM | 83 | 100 | 18 | – | – | |
| Phobius | 102 | 112 | 11 | – | – | |
| Phobius | 113 | 133 | 21 | – | – | |
| TMHMM | 115 | 134 | 20 | – | – | |
| ProSitePatterns | 125 | 149 | 25 | – | ||
| Phobius | 134 | 139 | 6 | – | – | |
| Pfam | 136 | 573 | 438 | 1.40E-83 | ||
| Phobius | 140 | 163 | 24 | – | – | |
| TMHMM | 141 | 163 | 23 | – | – | |
| Phobius | 164 | 188 | 25 | – | – | |
| TMHMM | 187 | 209 | 23 | – | – | |
| Phobius | 189 | 208 | 20 | – | – | |
| SUPERFAMILY | 190 | 288 | 99 | 2.75E-23 | ||
| Phobius | 209 | 228 | 20 | – | – | |
| Phobius | 229 | 252 | 24 | – | – | |
| TMHMM | 230 | 252 | 23 | – | – | |
| Phobius | 253 | 257 | 5 | – | – | |
| TMHMM | 256 | 278 | 23 | – | – | |
| Phobius | 258 | 278 | 21 | – | – | |
| Phobius | 279 | 377 | 99 | – | – | |
| TMHMM | 375 | 397 | 23 | – | – | |
| Phobius | 378 | 400 | 23 | – | – | |
| SUPERFAMILY | 399 | 613 | 215 | 2.75E-23 | ||
| Phobius | 401 | 419 | 19 | – | – | |
| TMHMM | 417 | 439 | 23 | – | – | |
| Phobius | 420 | 438 | 19 | – | – | |
| Phobius | 439 | 458 | 20 | – | – | |
| TMHMM | 459 | 476 | 18 | – | – | |
| Phobius | 459 | 476 | 18 | – | – | |
| Phobius | 477 | 501 | 25 | – | – | |
| Phobius | 502 | 528 | 27 | – | – | |
| TMHMM | 505 | 527 | 23 | – | – | |
| Phobius | 529 | 539 | 11 | – | – | |
| TMHMM | 539 | 561 | 23 | – | – | |
| Phobius | 540 | 565 | 26 | – | – | |
| Phobius | 566 | 584 | 19 | – | – | |
| Phobius | 585 | 605 | 21 | – | – | |
| TMHMM | 585 | 604 | 20 | – | – | |
| Phobius | 606 | 634 | 29 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Oligopeptide transport | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v3329140.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3329140.1, powered by CORGI.
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