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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3330050 |
| Transcript ID | Lj1g3v3330050.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | class Ia chitinase [Galega orientalis] gi|33414052|gb|AAP03088.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | – | – | |
| PANTHER | 1 | 190 | 190 | 2.40E-115 | – | |
| PANTHER | 1 | 190 | 190 | 2.40E-115 | – | |
| SignalP | 1 | 24 | 24 | – | – | |
| SignalP | 1 | 24 | 24 | – | – | |
| Phobius | 1 | 24 | 24 | – | – | |
| PIRSF | 2 | 199 | 198 | 3.20E-71 | ||
| Phobius | 8 | 19 | 12 | – | – | |
| Phobius | 20 | 24 | 5 | – | – | |
| ProSiteProfiles | 24 | 65 | 42 | 11.1 | ||
| ProDom | 25 | 54 | 30 | 7.00E-09 | ||
| Phobius | 25 | 199 | 175 | – | – | |
| Gene3D | 25 | 64 | 40 | 7.20E-16 | ||
| CDD | 25 | 63 | 39 | 8.65E-17 | – | |
| SUPERFAMILY | 26 | 66 | 41 | 3.59E-12 | ||
| SMART | 26 | 63 | 38 | 5.60E-16 | ||
| Pfam | 26 | 63 | 38 | 4.30E-14 | ||
| PRINTS | 34 | 42 | 9 | 2.50E-07 | ||
| ProSitePatterns | 36 | 55 | 20 | – | ||
| PRINTS | 42 | 49 | 8 | 2.50E-07 | ||
| PRINTS | 49 | 56 | 8 | 2.50E-07 | ||
| SUPERFAMILY | 72 | 190 | 119 | 2.73E-48 | ||
| Gene3D | 72 | 141 | 70 | 5.00E-33 | – | |
| Pfam | 75 | 196 | 122 | 7.30E-60 | ||
| CDD | 76 | 196 | 121 | 2.11E-66 | ||
| ProSitePatterns | 93 | 115 | 23 | – | ||
| Gene3D | 159 | 185 | 27 | 5.30E-14 | – | |
| Gene3D | 186 | 191 | 6 | 5.00E-33 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chitinase activity | Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Chitin catabolic process | The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. | ||
| Molecular function | Chitin binding | Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. | ||
| Biological process | Cell wall macromolecule catabolic process | The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall. |
Expression pattern of Lj1g3v3330050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3330050.1, powered by CORGI.
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