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Lj1g3v3330450.2

Overview

Field Value
Gene ID Lj1g3v3330450
Transcript ID Lj1g3v3330450.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like [Cicer arietinum] gi|502130644|ref|XP_004500721.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 3 3 – –
PANTHER
PTHR11986
1 222 222 9.90E-176
IPR005814
PANTHER
PTHR11986:SF84
1 222 222 9.90E-176 –
Phobius
SIGNAL_PEPTIDE
1 18 18 – –
Gene3D
G3DSA:3.40.640.10
2 222 221 4.00E-72
IPR015421
SUPERFAMILY
SSF53383
2 222 221 5.44E-73
IPR015424
Phobius
SIGNAL_PEPTIDE_H_REGION
4 13 10 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
14 18 5 – –
Pfam
PF00202
16 222 207 6.00E-47
IPR005814
Phobius
NON_CYTOPLASMIC_DOMAIN
19 222 204 – –
ProSitePatterns
PS00600
156 192 37 –
IPR005814

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0008483
Molecular function Transaminase activity Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v3330450.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3330450.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.