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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3354000 |
| Transcript ID | Lj1g3v3354000.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Glycine max] gi|356509543|ref|XP_003523507.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 37 | 464 | 428 | 1.10E-273 | – | |
| PANTHER | 37 | 464 | 428 | 1.10E-273 | – | |
| ProSiteProfiles | 71 | 105 | 35 | 7.837 | ||
| Pfam | 75 | 102 | 28 | 0.14 | ||
| ProSiteProfiles | 141 | 171 | 31 | 6.051 | ||
| ProSiteProfiles | 172 | 206 | 35 | 8.122 | ||
| Pfam | 175 | 200 | 26 | 0.05 | ||
| ProSiteProfiles | 244 | 280 | 37 | 6.807 | ||
| Pfam | 249 | 269 | 21 | 0.079 | ||
| Gene3D | 261 | 442 | 182 | 1.40E-09 | ||
| ProSiteProfiles | 282 | 316 | 35 | 13.241 | ||
| Pfam | 282 | 328 | 47 | 3.40E-10 | ||
| TIGRFAM | 284 | 317 | 34 | 2.50E-09 | ||
| SUPERFAMILY | 293 | 442 | 150 | 2.23E-06 | ||
| ProSiteProfiles | 317 | 347 | 31 | 7.037 | ||
| ProSiteProfiles | 353 | 387 | 35 | 8.616 | ||
| Pfam | 356 | 381 | 26 | 0.0058 | ||
| TIGRFAM | 357 | 379 | 23 | 9.50E-04 | ||
| ProSiteProfiles | 423 | 457 | 35 | 6.04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v3354000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3354000.1, powered by CORGI.
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