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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3443680 |
| Transcript ID | Lj1g3v3443680.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Peptide transporter PTR3-B [Medicago truncatula] gi|357505729|ref|XP_003623153.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 238 | 238 | 9.123 | ||
| PANTHER | 1 | 238 | 238 | 2.00E-156 | ||
| PANTHER | 1 | 238 | 238 | 2.00E-156 | – | |
| Phobius | 1 | 11 | 11 | – | – | |
| CDD | 1 | 156 | 156 | 3.37E-05 | ||
| SUPERFAMILY | 2 | 180 | 179 | 6.41E-12 | ||
| Gene3D | 4 | 154 | 151 | 4.80E-08 | – | |
| ProSitePatterns | 5 | 29 | 25 | – | ||
| Phobius | 12 | 38 | 27 | – | – | |
| Pfam | 16 | 221 | 206 | 8.70E-38 | ||
| TMHMM | 20 | 42 | 23 | – | – | |
| Phobius | 39 | 57 | 19 | – | – | |
| Phobius | 58 | 75 | 18 | – | – | |
| Phobius | 76 | 102 | 27 | – | – | |
| TMHMM | 103 | 125 | 23 | – | – | |
| Phobius | 103 | 125 | 23 | – | – | |
| Phobius | 126 | 130 | 5 | – | – | |
| TMHMM | 129 | 151 | 23 | – | – | |
| Phobius | 131 | 151 | 21 | – | – | |
| Phobius | 152 | 238 | 87 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Oligopeptide transport | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v3443680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3443680.1, powered by CORGI.
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