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Lj1g3v3608420.1

Overview

Field Value
Gene ID Lj1g3v3608420
Transcript ID Lj1g3v3608420.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: nucleolar GTP-binding protein 1-like [Glycine max] gi|356527250|ref|XP_003532225.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11702:SF28
9 307 299 2.90E-147 –
PANTHER
PTHR11702
9 307 299 2.90E-147 –
Coils
Coil
69 89 21 – –
Gene3D
G3DSA:3.40.50.300
113 300 188 1.30E-36
IPR027417
CDD
cd01897
115 293 179 1.98E-62 –
SUPERFAMILY
SSF52540
115 294 180 7.56E-27
IPR027417
Pfam
PF02421
117 174 58 8.40E-09
IPR030389
PRINTS
PR00326
117 137 21 5.80E-11
IPR006073
PRINTS
PR00326
138 156 19 5.80E-11
IPR006073
PRINTS
PR00326
165 180 16 5.80E-11
IPR006073
Pfam
PF06858
182 238 57 8.00E-17
IPR010674

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 41

Expression data

Expression pattern

Expression pattern of Lj1g3v3608420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3608420.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.