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Lj1g3v3833840.1

Overview

Field Value
Gene ID Lj1g3v3833840
Transcript ID Lj1g3v3833840.1
Lotus japonicus genome version MG20 v3.0
Description Germin-like protein subfamily 1 member [Medicago truncatula] gi|357468889|ref|XP_003604729.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31238
1 213 213 2.40E-145 –
PANTHER
PTHR31238:SF42
1 213 213 2.40E-145 –
Gene3D
G3DSA:2.60.120.10
12 209 198 1.30E-69
IPR014710
SUPERFAMILY
SSF51182
12 207 196 6.49E-47
IPR011051
SMART
SM00835
49 202 154 5.10E-34
IPR006045
Pfam
PF00190
53 199 147 5.70E-49
IPR006045
ProSitePatterns
PS00725
92 105 14 –
IPR019780
PRINTS
PR00325
97 117 21 5.30E-28
IPR001929
PRINTS
PR00325
132 152 21 5.30E-28
IPR001929
PRINTS
PR00325
165 180 16 5.30E-28
IPR001929

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0030145
Molecular function Manganese ion binding Interacting selectively and non-covalently with manganese (Mn) ions.
Subterm of
GO:0045735
Molecular function Nutrient reservoir activity Functions in the storage of nutritious substrates.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v3833840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3833840.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.