Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
IPR019780 is a Germin, manganese binding site.
<p>Germins and germin-like proteins [[cite:PUB00001527]] are a family of hexameric ubiquitous plant glycoproteins. They are not restricted to germinating grains as initially thought and therefore called 'germins', but they exist in all organs and developmental stages. They are all partly associated with the extracellular matrix.</p> <p>A wide range of functions have been uncovered for germins and germin-like proteins: some act as oxalate oxidases ([ec:1.2.3.4]) or as superoxide dismutases ([ec:1.15.1.1]), while others seem to be structural proteins or receptors for auxins or other proteins.</p> <p>Germins and germin-like proteins are highly similar to slime mold spherulins 1a and 1b which are proteins that accumulate specifically during spherulation, a process induced by various forms of environmental stress which leads to encystment and dormancy.</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: germin-like protein 5-1-like [Glycine max] gi|356572882|ref|XP_003554594.1| | 21 | ||
| – | PREDICTED: germin-like protein subfamily 1 member 13-like [Cicer arietinum] gi|502090474|ref|XP_004489240.1| | 19 | ||
| – | PREDICTED: germin-like protein subfamily 1 member 13-like [Cicer arietinum] gi|502090474|ref|XP_004489240.1| | 21 | ||
| – | Germin-like protein [Medicago truncatula] gi|357464681|ref|XP_003602622.1| | 22 | ||
| – | Germin-like protein subfamily 1 member [Medicago truncatula] gi|357468889|ref|XP_003604729.1| | 18 | ||
| – | Germin-like protein subfamily 1 member [Medicago truncatula] gi|357468889|ref|XP_003604729.1| | 13 | ||
| – | PREDICTED: germin-like protein subfamily 1 member 18-like [Cicer arietinum] gi|502165338|ref|XP_004513533.1| | 13 | ||
| – | Germin-like protein subfamily 1 member [Medicago truncatula] gi|357468889|ref|XP_003604729.1| | 21 | ||
| – | PREDICTED: germin-like protein 5-1-like [Glycine max] gi|356572882|ref|XP_003554594.1| | 21 | ||
| – | Germin-like protein [Medicago truncatula] gi|357495757|ref|XP_003618167.1| | 21 | ||
| – | Germin-like protein subfamily 1 member 1-like precursor [Glycine max] gi|359806194|ref|NP_001241459.1| | 19 | ||
| – | Germin-like protein subfamily 3 member 4-like precursor [Glycine max] gi|359807630|ref|NP_001241421.1| | 19 | ||
| – | PREDICTED: germin-like protein subfamily 3 member 4-like [Cicer arietinum] gi|502173445|ref|XP_004515331.1| | 13 | ||
| – | Germin-like protein [Medicago truncatula] gi|357513973|ref|XP_003627275.1| | 21 | ||
| – | PREDICTED: germin-like protein 8-14-like [Cicer arietinum] gi|502156426|ref|XP_004510468.1| | 21 | ||
| – | Germin-like protein [Medicago truncatula] gi|357513969|ref|XP_003627273.1| | 21 | ||
| – | PREDICTED: germin-like protein subfamily 3 member 2-like [Glycine max] gi|356546081|ref|XP_003541460.1| | 21 | ||
| – | PREDICTED: rhicadhesin receptor-like [Cicer arietinum] gi|502117451|ref|XP_004495826.1| | 21 | ||
| – | Germin-like protein 16 [Glycine max] gi|196122036|gb|ACG69492.1| | 21 | ||
| – | PREDICTED: germin-like protein subfamily 3 member 2-like [Cicer arietinum] gi|502121018|ref|XP_004497160.1| | 21 | ||
| – | Germin-like protein subfamily 1 member [Medicago truncatula] gi|357448633|ref|XP_003594592.1| | 13 | ||
| – | Germin-like protein subfamily 1 member 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9SFF9|GL17_ARATH Germin-like protein subfamily 1 member 7; TrEMBL-Plants: tr|I3T902|I3T902_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0620000 | 20 | ||
| – | Germin-like protein subfamily 1 member 1; TAIR: AT5G39100.1 germin-like protein 6; Swiss-Prot: sp|P92997|GL113_ARATH Germin-like protein subfamily 1 member 13; TrEMBL-Plants: tr|I3T902|I3T902_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0620100 | 20 | ||
| – | Germin-like protein; TAIR: AT1G09560.1 germin-like protein 5; Swiss-Prot: sp|Q6I544|GL52_ORYSJ Germin-like protein 5-1; TrEMBL-Plants: tr|I1NBL9|I1NBL9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0752400 | 20 | ||
| – | Germin-like protein subfamily 1 member 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q6K5Q0|GL21_ORYSJ Putative germin-like protein 2-1; TrEMBL-Plants: tr|I3TAN5|I3TAN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0242900 | 20 | ||
| – | Germin-like protein subfamily 1 member 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q6K5Q0|GL21_ORYSJ Putative germin-like protein 2-1; TrEMBL-Plants: tr|I3TAN5|I3TAN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0243100 | 20 | ||
| – | Germin-like protein subfamily 1 member 1; TAIR: AT5G39150.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q6K5Q0|GL21_ORYSJ Putative germin-like protein 2-1; TrEMBL-Plants: tr|I3TAN5|I3TAN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0243300 | 20 | ||
| – | Germin-like protein subfamily 1 member 1; TAIR: AT1G10460.1 germin-like protein 7; Swiss-Prot: sp|P92998|GL11_ARATH Germin-like protein subfamily 1 member 1; TrEMBL-Plants: tr|I3SED7|I3SED7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0312900 | 19 | ||
| – | Germin-like protein; TAIR: AT5G61750.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9FLT3|GL34_ARATH Germin-like protein subfamily 3 member 4; TrEMBL-Plants: tr|I3SLD9|I3SLD9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0308000 | 19 | ||
| – | Germin-like protein; TAIR: AT5G20630.1 germin 3; Swiss-Prot: sp|Q9ZRA4|AB19A_PRUPE Auxin-binding protein ABP19a; TrEMBL-Plants: tr|I3S064|I3S064_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0414800 | 20 | ||
| – | Germin-like family protein; TAIR: AT1G72610.1 germin-like protein 1; Swiss-Prot: sp|Q9ZRA4|AB19A_PRUPE Auxin-binding protein ABP19a; TrEMBL-Plants: tr|I3SM12|I3SM12_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0414900 | 20 | ||
| – | Germin-like protein; TAIR: AT1G72610.1 germin-like protein 1; Swiss-Prot: sp|Q9ZRA4|AB19A_PRUPE Auxin-binding protein ABP19a; TrEMBL-Plants: tr|I3SQD4|I3SQD4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0415000 | 20 | ||
| – | Germin-like protein; TAIR: AT3G10080.2 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9SR72|GL32_ARATH Germin-like protein subfamily 3 member 2; TrEMBL-Plants: tr|I3SA29|I3SA29_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0094900 | 20 | ||
| – | Germin-like protein 1; TAIR: AT3G62020.1 germin-like protein 10; Swiss-Prot: sp|Q9M263|GL24_ARATH Germin-like protein subfamily 2 member 4; TrEMBL-Plants: tr|I3T820|I3T820_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0234900 | 20 | ||
| – | Germin-like protein 1; TAIR: AT3G62020.1 germin-like protein 10; Swiss-Prot: sp|Q9M263|GL24_ARATH Germin-like protein subfamily 2 member 4; TrEMBL-Plants: tr|I3T5U1|I3T5U1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0236200 | 20 | ||
| – | Germin-like protein; TAIR: AT3G10080.2 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9SR72|GL32_ARATH Germin-like protein subfamily 3 member 2; TrEMBL-Plants: tr|A0A151TQ40|A0A151TQ40_CAJCA Germin-like protein subfamily 3 member 2; Found in the gene: LotjaGi5g1v0345300 | 20 | ||
| – | Germin-like protein; TAIR: AT3G10080.2 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9SR72|GL32_ARATH Germin-like protein subfamily 3 member 2; TrEMBL-Plants: tr|A0A151TQ40|A0A151TQ40_CAJCA Germin-like protein subfamily 3 member 2; Found in the gene: LotjaGi5g1v0345300 | 20 | ||
| – | Germin-like protein 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q6K5Q0|GL21_ORYSJ Putative germin-like protein 2-1; TrEMBL-Plants: tr|A0A151SB73|A0A151SB73_CAJCA Putative germin-like protein 2-1; Found in the gene: LotjaGi6g1v0268400 | 20 | ||
| – | Germin-like protein 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q6K5Q0|GL21_ORYSJ Putative germin-like protein 2-1; TrEMBL-Plants: tr|A0A0L9VDZ2|A0A0L9VDZ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0268600 | 20 | ||
| – | Germin-like protein 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q6K5Q0|GL21_ORYSJ Putative germin-like protein 2-1; TrEMBL-Plants: tr|A0A0L9VDZ2|A0A0L9VDZ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0268700 | 20 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| SignalP-noTM | SignalP_GRAM_NEGATIVE | 1 | 2.50 |