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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR019780
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 40 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.561s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0055049.1
n.a. PREDICTED: germin-like protein 5-1-like [Glycine max] gi|356572882|ref|XP_003554594.1| chr0 17656151 17657382 +
2 domain predictions
1 GO term
Lj0g3v0122139.1
n.a. PREDICTED: germin-like protein subfamily 1 member 13-like [Cicer arietinum] gi|502090474|ref|XP_004489240.1| chr0 54595645 54596470 -
2 domain predictions
1 GO term
Lj0g3v0122149.1
n.a. PREDICTED: germin-like protein subfamily 1 member 13-like [Cicer arietinum] gi|502090474|ref|XP_004489240.1| chr0 54595749 54596887 -
2 domain predictions
1 GO term
Lj1g3v1316980.1
n.a. Germin-like protein [Medicago truncatula] gi|357464681|ref|XP_003602622.1| chr1 15840253 15841309 -
2 domain predictions
1 GO term
Lj1g3v3833760.1
n.a. Germin-like protein subfamily 1 member [Medicago truncatula] gi|357468889|ref|XP_003604729.1| chr1 43437392 43439432 -
2 domain predictions
1 GO term
Lj1g3v3833840.1
n.a. Germin-like protein subfamily 1 member [Medicago truncatula] gi|357468889|ref|XP_003604729.1| chr1 43453262 43454535 -
2 domain predictions
1 GO term
Lj1g3v3833870.1
n.a. PREDICTED: germin-like protein subfamily 1 member 18-like [Cicer arietinum] gi|502165338|ref|XP_004513533.1| chr1 43463804 43465746 -
2 domain predictions
1 GO term
Lj1g3v3833880.1
n.a. Germin-like protein subfamily 1 member [Medicago truncatula] gi|357468889|ref|XP_003604729.1| chr1 43464028 43465747 -
2 domain predictions
1 GO term
Lj1g3v4808830.1
n.a. PREDICTED: germin-like protein 5-1-like [Glycine max] gi|356572882|ref|XP_003554594.1| chr1 58065012 58066696 +
2 domain predictions
1 GO term
Lj2g3v0946290.1
n.a. Germin-like protein [Medicago truncatula] gi|357495757|ref|XP_003618167.1| chr2 15029946 15031097 -
2 domain predictions
1 GO term
Lj2g3v1365980.1
n.a. germin-like protein subfamily 1 member 1-like precursor [Glycine max] gi|359806194|ref|NP_001241459.1| chr2 21445375 21446490 -
2 domain predictions
1 GO term
Lj3g3v1982330.1
n.a. germin-like protein subfamily 3 member 4-like precursor [Glycine max] gi|359807630|ref|NP_001241421.1| chr3 25514102 25515474 +
2 domain predictions
1 GO term
Lj3g3v1982340.1
n.a. PREDICTED: germin-like protein subfamily 3 member 4-like [Cicer arietinum] gi|502173445|ref|XP_004515331.1| chr3 25514102 25515741 +
2 domain predictions
1 GO term
Lj3g3v2590370.1
n.a. Germin-like protein [Medicago truncatula] gi|357513973|ref|XP_003627275.1| chr3 32113812 32114813 -
2 domain predictions
1 GO term
Lj3g3v2601410.1
n.a. PREDICTED: germin-like protein 8-14-like [Cicer arietinum] gi|502156426|ref|XP_004510468.1| chr3 32140780 32141695 -
2 domain predictions
1 GO term
Lj3g3v2601420.1
n.a. Germin-like protein [Medicago truncatula] gi|357513969|ref|XP_003627273.1| chr3 32144822 32146232 -
2 domain predictions
1 GO term
Lj5g3v0769550.1
n.a. PREDICTED: germin-like protein subfamily 3 member 2-like [Glycine max] gi|356546081|ref|XP_003541460.1| chr5 11234148 11235398 -
2 domain predictions
1 GO term
Lj5g3v1533460.1
n.a. PREDICTED: rhicadhesin receptor-like [Cicer arietinum] gi|502117451|ref|XP_004495826.1| chr5 22495082 22497095 +
2 domain predictions
1 GO term
Lj5g3v1537630.1
n.a. germin-like protein 16 [Glycine max] gi|196122036|gb|ACG69492.1| chr5 22606142 22607497 +
2 domain predictions
1 GO term
Lj5g3v2240920.1
n.a. PREDICTED: germin-like protein subfamily 3 member 2-like [Cicer arietinum] gi|502121018|ref|XP_004497160.1| chr5 32236442 32238145 +
2 domain predictions
1 GO term
Lj6g3v1629680.1
n.a. Germin-like protein subfamily 1 member [Medicago truncatula] gi|357448633|ref|XP_003594592.1| chr6 18385845 18386471 -
2 domain predictions
1 GO term
LotjaGi1g1v0620000.1
n.a. Germin-like protein subfamily 1 member 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9SFF9|GL17_ARATH Germin-like protein subfamily 1 member 7; TrEMBL-Plants: tr|I3T902|I3T902_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0620000 LjG1.1_chr1 116720262 116721759 -
2 domain predictions
1 GO term
LotjaGi1g1v0620100.1
n.a. Germin-like protein subfamily 1 member 1; TAIR: AT5G39100.1 germin-like protein 6; Swiss-Prot: sp|P92997|GL113_ARATH Germin-like protein subfamily 1 member 13; TrEMBL-Plants: tr|I3T902|I3T902_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0620100 LjG1.1_chr1 116753793 116756129 -
2 domain predictions
1 GO term
LotjaGi1g1v0752400.1
n.a. Germin-like protein; TAIR: AT1G09560.1 germin-like protein 5; Swiss-Prot: sp|Q6I544|GL52_ORYSJ Germin-like protein 5-1; TrEMBL-Plants: tr|I1NBL9|I1NBL9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0752400 LjG1.1_chr1 132495525 132501642 +
2 domain predictions
1 GO term
LotjaGi2g1v0242900.1
n.a. Germin-like protein subfamily 1 member 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q6K5Q0|GL21_ORYSJ Putative germin-like protein 2-1; TrEMBL-Plants: tr|I3TAN5|I3TAN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0242900 LjG1.1_chr2 70600704 70602011 +
2 domain predictions
1 GO term
LotjaGi2g1v0243100.1
n.a. Germin-like protein subfamily 1 member 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q6K5Q0|GL21_ORYSJ Putative germin-like protein 2-1; TrEMBL-Plants: tr|I3TAN5|I3TAN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0243100 LjG1.1_chr2 70613532 70614819 +
2 domain predictions
1 GO term
LotjaGi2g1v0243300.1
n.a. Germin-like protein subfamily 1 member 1; TAIR: AT5G39150.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q6K5Q0|GL21_ORYSJ Putative germin-like protein 2-1; TrEMBL-Plants: tr|I3TAN5|I3TAN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0243300 LjG1.1_chr2 70660937 70662364 -
2 domain predictions
1 GO term
LotjaGi2g1v0312900.1
n.a. Germin-like protein subfamily 1 member 1; TAIR: AT1G10460.1 germin-like protein 7; Swiss-Prot: sp|P92998|GL11_ARATH Germin-like protein subfamily 1 member 1; TrEMBL-Plants: tr|I3SED7|I3SED7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0312900 LjG1.1_chr2 78783548 78784961 -
2 domain predictions
1 GO term
LotjaGi3g1v0308000.1
n.a. Germin-like protein; TAIR: AT5G61750.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9FLT3|GL34_ARATH Germin-like protein subfamily 3 member 4; TrEMBL-Plants: tr|I3SLD9|I3SLD9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0308000 LjG1.1_chr3 65274576 65280951 +
2 domain predictions
1 GO term
LotjaGi3g1v0414800.1
n.a. Germin-like protein; TAIR: AT5G20630.1 germin 3; Swiss-Prot: sp|Q9ZRA4|AB19A_PRUPE Auxin-binding protein ABP19a; TrEMBL-Plants: tr|I3S064|I3S064_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0414800 LjG1.1_chr3 81986829 81987455 -
2 domain predictions
1 GO term
LotjaGi3g1v0414900.1
n.a. Germin-like family protein; TAIR: AT1G72610.1 germin-like protein 1; Swiss-Prot: sp|Q9ZRA4|AB19A_PRUPE Auxin-binding protein ABP19a; TrEMBL-Plants: tr|I3SM12|I3SM12_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0414900 LjG1.1_chr3 82011552 82017494 -
2 domain predictions
1 GO term
LotjaGi3g1v0415000.1
n.a. Germin-like protein; TAIR: AT1G72610.1 germin-like protein 1; Swiss-Prot: sp|Q9ZRA4|AB19A_PRUPE Auxin-binding protein ABP19a; TrEMBL-Plants: tr|I3SQD4|I3SQD4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0415000 LjG1.1_chr3 82020403 82021969 -
2 domain predictions
1 GO term
LotjaGi5g1v0094900.1
n.a. Germin-like protein; TAIR: AT3G10080.2 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9SR72|GL32_ARATH Germin-like protein subfamily 3 member 2; TrEMBL-Plants: tr|I3SA29|I3SA29_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0094900 LjG1.1_chr5 16842926 16844129 -
2 domain predictions
1 GO term
LotjaGi5g1v0234900.1
n.a. Germin-like protein 1; TAIR: AT3G62020.1 germin-like protein 10; Swiss-Prot: sp|Q9M263|GL24_ARATH Germin-like protein subfamily 2 member 4; TrEMBL-Plants: tr|I3T820|I3T820_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0234900 LjG1.1_chr5 54315391 54317710 +
2 domain predictions
1 GO term
LotjaGi5g1v0236200.1
n.a. Germin-like protein 1; TAIR: AT3G62020.1 germin-like protein 10; Swiss-Prot: sp|Q9M263|GL24_ARATH Germin-like protein subfamily 2 member 4; TrEMBL-Plants: tr|I3T5U1|I3T5U1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0236200 LjG1.1_chr5 54417816 54419399 -
2 domain predictions
1 GO term
LotjaGi5g1v0345300.1
n.a. Germin-like protein; TAIR: AT3G10080.2 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9SR72|GL32_ARATH Germin-like protein subfamily 3 member 2; TrEMBL-Plants: tr|A0A151TQ40|A0A151TQ40_CAJCA Germin-like protein subfamily 3 member 2; Found in the gene: LotjaGi5g1v0345300 LjG1.1_chr5 66189257 66189889 +
2 domain predictions
1 GO term
LotjaGi5g1v0345300.2
n.a. Germin-like protein; TAIR: AT3G10080.2 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q9SR72|GL32_ARATH Germin-like protein subfamily 3 member 2; TrEMBL-Plants: tr|A0A151TQ40|A0A151TQ40_CAJCA Germin-like protein subfamily 3 member 2; Found in the gene: LotjaGi5g1v0345300 LjG1.1_chr5 66189260 66190025 +
2 domain predictions
1 GO term
LotjaGi6g1v0268400.1
n.a. Germin-like protein 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q6K5Q0|GL21_ORYSJ Putative germin-like protein 2-1; TrEMBL-Plants: tr|A0A151SB73|A0A151SB73_CAJCA Putative germin-like protein 2-1; Found in the gene: LotjaGi6g1v0268400 LjG1.1_chr6 58334709 58335799 +
2 domain predictions
1 GO term
LotjaGi6g1v0268600.1
n.a. Germin-like protein 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q6K5Q0|GL21_ORYSJ Putative germin-like protein 2-1; TrEMBL-Plants: tr|A0A0L9VDZ2|A0A0L9VDZ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0268600 LjG1.1_chr6 58341378 58342260 -
2 domain predictions
1 GO term
LotjaGi6g1v0268700.1
n.a. Germin-like protein 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q6K5Q0|GL21_ORYSJ Putative germin-like protein 2-1; TrEMBL-Plants: tr|A0A0L9VDZ2|A0A0L9VDZ2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0268700 LjG1.1_chr6 58344325 58345266 -
2 domain predictions
1 GO term