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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3833940 |
| Transcript ID | Lj1g3v3833940.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Glycine max] gi|356529553|ref|XP_003533355.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 27 | 9 | 0 | – | |
| PANTHER | 19 | 27 | 9 | 0 | – | |
| PANTHER | 65 | 499 | 435 | 0 | – | |
| PANTHER | 65 | 499 | 435 | 0 | – | |
| ProSiteProfiles | 82 | 121 | 40 | 7.761 | ||
| ProSiteProfiles | 122 | 156 | 35 | 5.053 | ||
| ProSiteProfiles | 157 | 187 | 31 | 6.599 | ||
| Pfam | 162 | 184 | 23 | 0.11 | ||
| Gene3D | 163 | 370 | 208 | 4.70E-09 | ||
| ProSiteProfiles | 188 | 218 | 31 | 10.413 | ||
| TIGRFAM | 190 | 215 | 26 | 0.0013 | ||
| SUPERFAMILY | 199 | 243 | 45 | 3.29E-05 | ||
| Pfam | 218 | 266 | 49 | 4.50E-11 | ||
| ProSiteProfiles | 219 | 253 | 35 | 11.915 | ||
| TIGRFAM | 221 | 254 | 34 | 6.40E-06 | ||
| ProSiteProfiles | 254 | 288 | 35 | 7.958 | ||
| ProSiteProfiles | 289 | 319 | 31 | 9.109 | ||
| TIGRFAM | 294 | 320 | 27 | 0.0015 | ||
| SUPERFAMILY | 304 | 337 | 34 | 3.29E-05 | ||
| Pfam | 319 | 367 | 49 | 2.20E-09 | ||
| ProSiteProfiles | 320 | 354 | 35 | 10.106 | ||
| TIGRFAM | 323 | 355 | 33 | 5.10E-04 | ||
| ProSiteProfiles | 355 | 385 | 31 | 7.3 | ||
| ProSiteProfiles | 391 | 421 | 31 | 6.116 | ||
| ProSiteProfiles | 423 | 453 | 31 | 5.766 | ||
| SUPERFAMILY | 430 | 479 | 50 | 3.29E-05 | ||
| Gene3D | 438 | 478 | 41 | 4.70E-09 | ||
| ProSiteProfiles | 457 | 491 | 35 | 7.432 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v3833940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3833940.1, powered by CORGI.
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