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Lj1g3v3975090.2

Overview

Field Value
Gene ID Lj1g3v3975090
Transcript ID Lj1g3v3975090.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Theobroma cacao] gi|508719325|gb|EOY11222.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 36 36 – –
PANTHER
PTHR23237
5 128 124 8.10E-79
IPR021154
Pfam
PF04410
28 125 98 1.30E-36
IPR007504
Gene3D
G3DSA:2.40.10.230
34 115 82 2.10E-24 –
SUPERFAMILY
SSF50447
40 114 75 7.06E-19
IPR009000
ProDom
PD020235
41 124 84 1.00E-37
IPR021154

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0001522
Biological process Pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
Subterm of
GO:0042254
Biological process Ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj1g3v3975090.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3975090.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.