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Gar1/Naf1 RNA binding region
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pseudouridine synthesis | The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs. | ||
| Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | H/ACA ribonucleoprotein complex non-core subunit NAF1 [Medicago truncatula] gi|358345105|ref|XP_003636623.1| | 6 | ||
| – | H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Theobroma cacao] gi|508719325|gb|EOY11222.1| | 9 | ||
| – | PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like [Cicer arietinum] gi|502082945|ref|XP_004487320.1| | 7 | ||
| – | H/ACA ribonucleoprotein complex subunit 1-like protein 1; TAIR: AT3G03920.1 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein; Swiss-Prot: sp|Q8VZT0|NLAL1_ARATH Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; TrEMBL-Plants: tr|A0A072U1E4|A0A072U1E4_MEDTR Gar1/Naf1 RNA-binding region protein; Found in the gene: LotjaGi1g1v0642700_LC | 9 | ||
| – | H/ACA ribonucleoprotein complex subunit 1-like protein 1; TAIR: AT3G03920.1 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein; Swiss-Prot: sp|Q8VZT0|NLAL1_ARATH Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; TrEMBL-Plants: tr|A0A072U1E4|A0A072U1E4_MEDTR Gar1/Naf1 RNA-binding region protein; Found in the gene: LotjaGi1g1v0642700_LC | 9 | ||
| – | H/ACA ribonucleoprotein complex non-core subunit NAF1; TAIR: AT1G03530.1 nuclear assembly factor 1; Swiss-Prot: sp|Q96HR8|NAF1_HUMAN H/ACA ribonucleoprotein complex non-core subunit NAF1; TrEMBL-Plants: tr|A0A1J7HBW8|A0A1J7HBW8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0441300 | 9 | ||
| – | H/ACA ribonucleoprotein complex non-core subunit NAF1; TAIR: AT1G03530.1 nuclear assembly factor 1; Swiss-Prot: sp|Q96HR8|NAF1_HUMAN H/ACA ribonucleoprotein complex non-core subunit NAF1; TrEMBL-Plants: tr|K7LU49|K7LU49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0458700 | 9 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 14.29 |