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Lj1g3v4048440.1

Overview

Field Value
Gene ID Lj1g3v4048440
Transcript ID Lj1g3v4048440.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: translocase of chloroplast 34-like [Glycine max] gi|356571841|ref|XP_003554080.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10903
1 313 313 2.50E-78 –
PIRSF
PIRSF038134
1 309 309 2.00E-163
IPR005688
TIGRFAM
TIGR00991
1 310 310 3.30E-176
IPR005688
CDD
cd01853
7 252 246 1.89E-133 –
SUPERFAMILY
SSF52540
7 257 251 4.21E-28
IPR027417
Gene3D
G3DSA:3.40.50.300
7 256 250 2.30E-75
IPR027417
ProSiteProfiles
PS51720
35 260 226 65.555
IPR006703
Pfam
PF04548
38 228 191 1.10E-37
IPR006703

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0009707
Cellular component Chloroplast outer membrane The outer, i.e. cytoplasm-facing, lipid bilayer of the chloroplast envelope.
Subterm of
GO:0015450
Molecular function P-P-bond-hydrolysis-driven protein transmembrane transporter activity Primary active carrier-mediated transport of a protein across a membrane, driven by the hydrolysis of the diphosphate bond of inorganic pyrophosphate, ATP, or another nucleoside triphosphate. The transport protein may or may not be transiently phosphorylated, but the substrate is not phosphorylated.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj1g3v4048440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4048440.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.