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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4236960 |
| Transcript ID | Lj1g3v4236960.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | type IIB calcium ATPase [Medicago truncatula] gi|18483249|gb|AAL73984.1|AF466149_1 |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 169 | 169 | – | – | |
| PANTHER | 1 | 887 | 887 | 0 | – | |
| PANTHER | 1 | 887 | 887 | 0 | – | |
| Pfam | 5 | 49 | 45 | 7.50E-18 | ||
| TIGRFAM | 104 | 1013 | 910 | 0 | ||
| SMART | 109 | 187 | 79 | 1.80E-07 | ||
| Pfam | 116 | 182 | 67 | 2.70E-14 | ||
| SUPERFAMILY | 117 | 233 | 117 | 9.55E-116 | – | |
| TMHMM | 170 | 189 | 20 | – | – | |
| Phobius | 170 | 189 | 20 | – | – | |
| Phobius | 190 | 194 | 5 | – | – | |
| Phobius | 195 | 215 | 21 | – | – | |
| TMHMM | 199 | 216 | 18 | – | – | |
| Pfam | 202 | 441 | 240 | 3.90E-47 | ||
| TIGRFAM | 202 | 476 | 275 | 1.40E-36 | ||
| Phobius | 216 | 351 | 136 | – | – | |
| SUPERFAMILY | 235 | 331 | 97 | 1.05E-26 | – | |
| Gene3D | 275 | 334 | 60 | 2.50E-139 | ||
| PRINTS | 281 | 295 | 15 | 3.60E-33 | – | |
| SUPERFAMILY | 333 | 444 | 112 | 9.55E-116 | – | |
| Phobius | 352 | 374 | 23 | – | – | |
| TMHMM | 352 | 374 | 23 | – | – | |
| Phobius | 375 | 393 | 19 | – | – | |
| Phobius | 394 | 423 | 30 | – | – | |
| TMHMM | 396 | 418 | 23 | – | – | |
| Phobius | 424 | 815 | 392 | – | – | |
| Gene3D | 440 | 655 | 216 | 2.80E-52 | ||
| Pfam | 448 | 764 | 317 | 1.30E-17 | – | |
| SUPERFAMILY | 449 | 468 | 20 | 2.64E-55 | ||
| PRINTS | 450 | 464 | 15 | 3.60E-33 | – | |
| ProSitePatterns | 452 | 458 | 7 | – | ||
| SUPERFAMILY | 456 | 660 | 205 | 2.40E-48 | ||
| TIGRFAM | 543 | 696 | 154 | 2.50E-19 | ||
| SUPERFAMILY | 605 | 856 | 252 | 2.64E-55 | ||
| PRINTS | 608 | 626 | 19 | 6.10E-13 | ||
| PRINTS | 648 | 659 | 12 | 3.60E-33 | – | |
| PRINTS | 670 | 680 | 11 | 3.60E-33 | – | |
| TIGRFAM | 717 | 838 | 122 | 5.10E-28 | ||
| Gene3D | 729 | 1013 | 285 | 2.50E-139 | ||
| PRINTS | 751 | 767 | 17 | 6.10E-13 | ||
| PRINTS | 751 | 770 | 20 | 3.60E-33 | – | |
| PRINTS | 775 | 787 | 13 | 3.60E-33 | – | |
| PRINTS | 783 | 808 | 26 | 6.10E-13 | ||
| SUPERFAMILY | 801 | 1012 | 212 | 9.55E-116 | – | |
| Phobius | 816 | 836 | 21 | – | – | |
| TMHMM | 818 | 840 | 23 | – | – | |
| Pfam | 836 | 1009 | 174 | 7.30E-42 | ||
| Phobius | 837 | 841 | 5 | – | – | |
| Phobius | 842 | 860 | 19 | – | – | |
| Phobius | 861 | 887 | 27 | – | – | |
| TMHMM | 883 | 902 | 20 | – | – | |
| Phobius | 888 | 905 | 18 | – | – | |
| PANTHER | 903 | 1032 | 130 | 0 | – | |
| PANTHER | 903 | 1032 | 130 | 0 | – | |
| Phobius | 906 | 916 | 11 | – | – | |
| Phobius | 917 | 935 | 19 | – | – | |
| Phobius | 936 | 955 | 20 | – | – | |
| TMHMM | 956 | 978 | 23 | – | – | |
| Phobius | 956 | 981 | 26 | – | – | |
| Phobius | 982 | 986 | 5 | – | – | |
| Phobius | 987 | 1010 | 24 | – | – | |
| TMHMM | 988 | 1010 | 23 | – | – | |
| Phobius | 1011 | 1036 | 26 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Calcium-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans). | ||
| Molecular function | Calmodulin binding | Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Calcium ion transmembrane transport | A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of Lj1g3v4236960.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4236960.1, powered by CORGI.
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