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Lj1g3v4317480.2

Overview

Field	Value
Gene ID	Lj1g3v4317480
Transcript ID	Lj1g3v4317480.2
Related isoforms 1	Lj1g3v4317480.1
Lotus japonicus genome version	MG20 v3.0
Description	Myb family transcription factor APL [Medicago truncatula] gi\|357509909\|ref\|XP_003625243.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31314:SF7 View details on PTHR31314:SF7 Search for proteins/transripts with this domain View external data on PTHR31314:SF7	10	315	306	1.00E-77	–
PANTHER	PTHR31314 View details on PTHR31314 Search for proteins/transripts with this domain View external data on PTHR31314	10	315	306	1.00E-77	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	161	184	24	–	–
SUPERFAMILY	SSF46689 View details on SSF46689 Search for proteins/transripts with this domain View external data on SSF46689	180	235	56	4.84E-10	IPR009057 Show description in modal box View details on IPR009057 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.10.10.60 View details on G3DSA:1.10.10.60 Search for proteins/transripts with this domain View external data on G3DSA:1.10.10.60	181	237	57	1.50E-19	IPR009057 Show description in modal box View details on IPR009057 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR01557 View details on TIGR01557 Search for proteins/transripts with this domain View external data on TIGR01557	182	236	55	2.90E-17	IPR006447 Show description in modal box View details on IPR006447 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF14379 View details on PF14379 Search for proteins/transripts with this domain View external data on PF14379	267	313	47	7.10E-07	IPR025756 Show description in modal box View details on IPR025756 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj1g3v4317480.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4317480.2, powered by CORGI.

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