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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4393320 |
| Transcript ID | Lj1g3v4393320.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cicer arietinum] gi|502109357|ref|XP_004493626.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 511 | 511 | 1.60E-293 | – | |
| TIGRFAM | 1 | 34 | 34 | 1.10E-05 | ||
| Pfam | 1 | 29 | 29 | 3.60E-05 | ||
| ProSiteProfiles | 1 | 32 | 32 | 9.109 | ||
| ProSiteProfiles | 68 | 98 | 31 | 5.283 | ||
| SUPERFAMILY | 69 | 225 | 157 | 1.82E-06 | ||
| Pfam | 98 | 145 | 48 | 4.10E-10 | ||
| ProSiteProfiles | 99 | 133 | 35 | 10.819 | ||
| Gene3D | 100 | 258 | 159 | 5.20E-09 | ||
| TIGRFAM | 101 | 135 | 35 | 3.10E-07 | ||
| ProSiteProfiles | 134 | 168 | 35 | 9.021 | ||
| ProSiteProfiles | 169 | 199 | 31 | 8.374 | ||
| TIGRFAM | 173 | 201 | 29 | 1.10E-04 | ||
| Pfam | 174 | 200 | 27 | 6.30E-04 | ||
| ProSiteProfiles | 200 | 230 | 31 | 9.514 | ||
| TIGRFAM | 202 | 226 | 25 | 0.0023 | ||
| Pfam | 202 | 226 | 25 | 1.20E-04 | ||
| Pfam | 230 | 277 | 48 | 2.20E-07 | ||
| ProSiteProfiles | 231 | 265 | 35 | 12.408 | ||
| TIGRFAM | 233 | 265 | 33 | 3.20E-07 | ||
| ProSiteProfiles | 266 | 301 | 36 | 5.174 | ||
| ProSiteProfiles | 302 | 332 | 31 | 7.432 | ||
| Gene3D | 327 | 377 | 51 | 5.20E-09 | ||
| Pfam | 333 | 380 | 48 | 3.80E-13 | ||
| ProSiteProfiles | 333 | 367 | 35 | 12.902 | ||
| TIGRFAM | 335 | 368 | 34 | 7.40E-09 | ||
| ProSiteProfiles | 368 | 403 | 36 | 7.541 | ||
| ProSiteProfiles | 404 | 438 | 35 | 7.881 | ||
| Pfam | 407 | 432 | 26 | 0.0039 | ||
| Gene3D | 434 | 471 | 38 | 5.20E-09 | ||
| ProSiteProfiles | 470 | 504 | 35 | 7.695 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v4393320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4393320.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.