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Lj1g3v4435510.1

Overview

Field Value
Gene ID Lj1g3v4435510
Transcript ID Lj1g3v4435510.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ATP-dependent RNA helicase DHX8 [Glycine max] gi|356502628|ref|XP_003520120.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR18934
1 49 49 0 –
PANTHER
PTHR18934:SF143
1 49 49 0 –
SUPERFAMILY
SSF52540
1 44 44 8.88E-78
IPR027417
CDD
cd00046
1 46 46 5.06E-06 –
Gene3D
G3DSA:3.40.50.300
1 48 48 9.10E-15
IPR027417
ProSiteProfiles
PS51192
1 120 120 9.868
IPR014001
ProSitePatterns
PS00690
20 29 10 –
IPR002464
SUPERFAMILY
SSF52540
89 467 379 8.88E-78
IPR027417
Gene3D
G3DSA:3.40.50.300
91 104 14 9.10E-15
IPR027417
PANTHER
PTHR18934:SF143
92 581 490 0 –
PANTHER
PTHR18934
92 581 490 0 –
CDD
cd00079
127 284 158 1.76E-14 –
ProSiteProfiles
PS51194
138 317 180 16.718
IPR001650
Gene3D
G3DSA:3.40.50.300
141 295 155 6.30E-14
IPR027417
Pfam
PF00271
146 277 132 6.70E-15
IPR001650
SMART
SM00490
169 277 109 2.30E-18
IPR001650
SMART
SM00847
337 428 92 1.10E-24
IPR007502
Pfam
PF04408
338 427 90 2.50E-17
IPR007502
Pfam
PF07717
484 576 93 3.30E-20
IPR011709

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004386
Molecular function Helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj1g3v4435510.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4435510.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.