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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4447110 |
| Transcript ID | Lj1g3v4447110.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: calcium-transporting ATPase 12, plasma membrane-type-like [Glycine max] gi|356570602|ref|XP_003553474.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 798 | 798 | 0 | – | |
| Phobius | 1 | 64 | 64 | – | – | |
| PANTHER | 1 | 798 | 798 | 0 | – | |
| TIGRFAM | 7 | 919 | 913 | 2.40E-301 | ||
| SUPERFAMILY | 13 | 132 | 120 | 2.75E-118 | – | |
| Pfam | 14 | 81 | 68 | 3.50E-09 | ||
| TMHMM | 58 | 80 | 23 | – | – | |
| Phobius | 65 | 86 | 22 | – | – | |
| Phobius | 87 | 97 | 11 | – | – | |
| TMHMM | 95 | 117 | 23 | – | – | |
| Phobius | 98 | 117 | 20 | – | – | |
| Pfam | 101 | 348 | 248 | 2.50E-47 | ||
| Phobius | 118 | 252 | 135 | – | – | |
| SUPERFAMILY | 133 | 231 | 99 | 3.27E-25 | – | |
| Gene3D | 174 | 234 | 61 | 2.90E-163 | ||
| PRINTS | 180 | 194 | 15 | 6.80E-35 | – | |
| SUPERFAMILY | 233 | 351 | 119 | 2.75E-118 | – | |
| Phobius | 253 | 273 | 21 | – | – | |
| TMHMM | 253 | 275 | 23 | – | – | |
| Phobius | 274 | 298 | 25 | – | – | |
| Phobius | 299 | 329 | 31 | – | – | |
| TIGRFAM | 300 | 384 | 85 | 5.00E-21 | ||
| TMHMM | 303 | 325 | 23 | – | – | |
| Phobius | 330 | 721 | 392 | – | – | |
| Gene3D | 347 | 564 | 218 | 3.00E-47 | ||
| SUPERFAMILY | 355 | 375 | 21 | 1.17E-56 | ||
| Pfam | 355 | 676 | 322 | 1.00E-17 | – | |
| PRINTS | 357 | 371 | 15 | 6.80E-35 | – | |
| ProSitePatterns | 359 | 365 | 7 | – | ||
| SUPERFAMILY | 364 | 561 | 198 | 5.01E-35 | ||
| SUPERFAMILY | 507 | 767 | 261 | 1.17E-56 | ||
| PRINTS | 510 | 528 | 19 | 1.90E-11 | ||
| PRINTS | 557 | 568 | 12 | 6.80E-35 | – | |
| PRINTS | 579 | 589 | 11 | 6.80E-35 | – | |
| TIGRFAM | 633 | 742 | 110 | 1.10E-33 | ||
| Gene3D | 641 | 918 | 278 | 2.90E-163 | ||
| PRINTS | 662 | 681 | 20 | 6.80E-35 | – | |
| PRINTS | 662 | 678 | 17 | 1.90E-11 | ||
| PRINTS | 686 | 698 | 13 | 6.80E-35 | – | |
| PRINTS | 694 | 719 | 26 | 1.90E-11 | ||
| SUPERFAMILY | 712 | 918 | 207 | 2.75E-118 | – | |
| Phobius | 722 | 742 | 21 | – | – | |
| TMHMM | 722 | 744 | 23 | – | – | |
| Phobius | 743 | 753 | 11 | – | – | |
| Pfam | 747 | 916 | 170 | 6.40E-48 | ||
| TMHMM | 749 | 771 | 23 | – | – | |
| Phobius | 754 | 773 | 20 | – | – | |
| Phobius | 774 | 793 | 20 | – | – | |
| Phobius | 794 | 816 | 23 | – | – | |
| TMHMM | 794 | 816 | 23 | – | – | |
| PANTHER | 814 | 925 | 112 | 0 | – | |
| PANTHER | 814 | 925 | 112 | 0 | – | |
| Phobius | 817 | 863 | 47 | – | – | |
| TMHMM | 862 | 884 | 23 | – | – | |
| Phobius | 864 | 884 | 21 | – | – | |
| Phobius | 885 | 895 | 11 | – | – | |
| Phobius | 896 | 914 | 19 | – | – | |
| TMHMM | 897 | 914 | 18 | – | – | |
| Phobius | 915 | 947 | 33 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Calcium-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Calcium ion transmembrane transport | A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of Lj1g3v4447110.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4447110.1, powered by CORGI.
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