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Lj1g3v4449230.2

Overview

Field Value
Gene ID Lj1g3v4449230
Transcript ID Lj1g3v4449230.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: histone H2A variant 1-like [Fragaria vesca subsp]. vesca] gi|470108692|ref|XP_004290644.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23430
1 135 135 7.50E-98 –
MobiDBLite
mobidb-lite
1 37 37 – –
PANTHER
PTHR23430:SF76
1 135 135 7.50E-98 –
Pfam
PF00125
13 104 92 2.30E-20
IPR007125
SUPERFAMILY
SSF47113
14 112 99 5.12E-39
IPR009072
SMART
SM00414
15 135 121 1.00E-65
IPR002119
Gene3D
G3DSA:1.10.20.10
17 134 118 6.00E-49
IPR009072
CDD
cd00074
18 131 114 3.75E-53 –
PRINTS
PR00620
26 48 23 5.10E-40
IPR002119
PRINTS
PR00620
56 71 16 5.10E-40
IPR002119
PRINTS
PR00620
71 84 14 5.10E-40
IPR002119
PRINTS
PR00620
85 99 15 5.10E-40
IPR002119
Pfam
PF16211
105 134 30 1.10E-10
IPR032454
PRINTS
PR00620
112 130 19 5.10E-40
IPR002119

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj1g3v4449230.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4449230.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.