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SM00414

Source: SMART

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Associated Lotus transcripts 36

Transcript Name Description Predicted domains Domain count
Lj0g3v0110789.1
– Histone H2A [Aegilops tauschii] gi|475577812|gb|EMT17934.1|
Domains
15
Lj0g3v0192519.1
– Histone H2A [Aegilops tauschii] gi|475577812|gb|EMT17934.1|
Domains
15
Lj1g3v1914950.1
– Histone 2 [Populus trichocarpa] gi|224143081|ref|XP_002324843.1|
Domains
14
Lj1g3v4449230.2
– PREDICTED: histone H2A variant 1-like [Fragaria vesca subsp]. vesca] gi|470108692|ref|XP_004290644.1|
Domains
14
Lj1g3v4515900.1
– Histone H2A [Naegleria gruberi] gi|290995687|ref|XP_002680414.1|
Domains
16
Lj1g3v4921050.1
– Histone H2A [Medicago truncatula] gi|357511939|ref|XP_003626258.1|
Domains
15
Lj1g3v4955240.1
– PREDICTED: histone H2AX [Vitis vinifera] gi|225451096|ref|XP_002265878.1|
Domains
15
Lj3g3v1617180.1
– PREDICTED: probable histone H2A.3 [Vitis vinifera] gi|225469181|ref|XP_002275483.1|
Domains
15
Lj4g3v1812480.1
– Histone 2 [Populus trichocarpa] gi|224143081|ref|XP_002324843.1|
Domains
13
Lj5g3v0539920.1
– Histone 2 [Populus trichocarpa] gi|224092416|ref|XP_002309600.1|
Domains
15
Lj5g3v1014930.1
– Histone H2A [Medicago truncatula] gi|357440545|ref|XP_003590550.1|
Domains
14
LotjaGi1g1v0387400.1
– Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q9C944|H2AV3_ARATH Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SBH0|I3SBH0_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0387400
Domains
15
LotjaGi1g1v0387400.2
– Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q8H7Y8|H2AV1_ORYSJ Probable histone H2A variant 1; TrEMBL-Plants: tr|I3SBH0|I3SBH0_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0387400
Domains
12
LotjaGi1g1v0575700.1
– Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I1H6W0|I1H6W0_BRADI Histone H2A; Found in the gene: LotjaGi1g1v0575700
Domains
16
LotjaGi1g1v0714800.1
– Histone H2A; TAIR: AT3G54560.1 histone H2A 11; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|I3SM38|I3SM38_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0714800
Domains
14
LotjaGi1g1v0732900.1
– Histone H2A; TAIR: AT1G08880.1 Histone superfamily protein; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|V7CZN0|V7CZN0_PHAVU Histone H2A; Found in the gene: LotjaGi1g1v0732900
Domains
16
LotjaGi1g1v0771500.1
– Histone H2A; TAIR: AT5G27670.1 histone H2A 7; Swiss-Prot: sp|Q94F49|H2A5_ARATH Probable histone H2A.5; TrEMBL-Plants: tr|V7BPQ3|V7BPQ3_PHAVU Histone H2A; Found in the gene: LotjaGi1g1v0771500
Domains
16
LotjaGi1g1v0776300.1
– Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300
Domains
16
LotjaGi1g1v0776300.2
– Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300
Domains
16
LotjaGi1g1v0776300.3
– Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300
Domains
16
LotjaGi3g1v0233900.1
– Histone H2A; TAIR: AT5G54640.1 Histone superfamily protein; Swiss-Prot: sp|Q9LD28|H2A6_ARATH Histone H2A.6; TrEMBL-Plants: tr|I1LUS3|I1LUS3_SOYBN Histone H2A; Found in the gene: LotjaGi3g1v0233900
Domains
16
LotjaGi3g1v0233900.2
– Histone H2A; TAIR: AT4G27230.1 histone H2A 2; Swiss-Prot: sp|O81826|H2A3_ARATH Probable histone H2A.3; TrEMBL-Plants: tr|T2DMX9|T2DMX9_PHAVU Histone H2A; Found in the gene: LotjaGi3g1v0233900
Domains
16
LotjaGi3g1v0234200.1
– Histone H2A; TAIR: AT1G51060.1 histone H2A 10; Swiss-Prot: sp|Q9C681|H2A1_ARATH Probable histone H2A.1; TrEMBL-Plants: tr|A0A1J7HRN0|A0A1J7HRN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0234200
Domains
16
LotjaGi3g1v0281000.1
– Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I3SUS3|I3SUS3_LOTJA Histone H2A; Found in the gene: LotjaGi3g1v0281000
Domains
16
LotjaGi3g1v0281100.1
– Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I3T2M3|I3T2M3_LOTJA Histone H2A; Found in the gene: LotjaGi3g1v0281100
Domains
16
LotjaGi3g1v0281600.1
– Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|Q9M531|H2A_EUPES Histone H2A; TrEMBL-Plants: tr|V4LCQ3|V4LCQ3_EUTSA Histone H2A; Found in the gene: LotjaGi3g1v0281600
Domains
16
LotjaGi3g1v0367900.1
– Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|K3XMR4|K3XMR4_SETIT Histone H2A; Found in the gene: LotjaGi3g1v0367900
Domains
16
LotjaGi4g1v0137000_LC.1
– Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q9C944|H2AV3_ARATH Probable histone H2A variant 3; TrEMBL-Plants: tr|D7SUM0|D7SUM0_VITVI Histone H2A; Found in the gene: LotjaGi4g1v0137000_LC
Domains
14
LotjaGi4g1v0137000_LC.2
– Histone H2A; TAIR: AT2G38810.1 histone H2A 8; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|A0A0R0GJB9|A0A0R0GJB9_SOYBN Histone H2A; Found in the gene: LotjaGi4g1v0137000_LC
Domains
12
LotjaGi4g1v0266100.1
– Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3S6W2|I3S6W2_LOTJA Histone H2A; Found in the gene: LotjaGi4g1v0266100
Domains
16
LotjaGi5g1v0061500.1
– Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SSH5|I3SSH5_LOTJA Histone H2A; Found in the gene: LotjaGi5g1v0061500
Domains
16
LotjaGi5g1v0061500.2
– Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|A0A164U3L0|A0A164U3L0_DAUCA Histone H2A; Found in the gene: LotjaGi5g1v0061500
Domains
13
LotjaGi5g1v0061500.3
– Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|A0A164U3L0|A0A164U3L0_DAUCA Histone H2A; Found in the gene: LotjaGi5g1v0061500
Domains
13
LotjaGi5g1v0061500.4
– Histone H2A; TAIR: AT3G54560.1 histone H2A 11; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|A0A164U3L0|A0A164U3L0_DAUCA Histone H2A; Found in the gene: LotjaGi5g1v0061500
Domains
13
LotjaGi5g1v0173900.1
– Histone H2A; TAIR: AT3G54560.1 histone H2A 11; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SST0|I3SST0_LOTJA Histone H2A; Found in the gene: LotjaGi5g1v0173900
Domains
14
LotjaGi5g1v0173900.2
– Histone H2A; TAIR: AT3G54560.1 histone H2A 11; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SST0|I3SST0_LOTJA Histone H2A; Found in the gene: LotjaGi5g1v0173900
Domains
14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 2.78