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GO:0000785

View this GO term in other databases

Overview

Field Value
Namespace Cellular component
Short description Chromatin
Full defintion The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
Subterm of

Relationships

The relationship of GO:0000785 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCelh
PMID
Characterization of the RNA content of chromatin.Mondal T, Rasmussen M, Pandey GK, Isaksson A, Kanduri C
Genome Res. 2010 Jul; 20 (7): 899–907.PMID: 20404130

Noncoding RNA (ncRNA) constitutes a significant portion of the mammalian transcriptome. Emerging evidence suggests that it regulates gene expression in cis or trans by modulating the chromatin structure. To uncover the functional role of ncRNA in chromatin organization, we deep sequenced chromatin-associated RNAs (CARs) from human fibroblast (HF) cells. This resulted in the identification of 141 intronic regions and 74 intergenic regions harboring CARs. The intronic and intergenic CARs show significant conservation across 44 species of placental mammals. Functional characterization of one of the intergenic CARs, Intergenic10, revealed that it regulates gene expression of neighboring genes through modulating the chromatin structure in cis. Our data suggest that ncRNA is an integral component of chromatin and that it may regulate various biological functions through fine-tuning of the chromatin architecture.

Associated Lotus transcripts 10

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0217419.1
– HMG-Y-related protein A [Medicago truncatula] gi|357460891|ref|XP_003600727.1|
GO terms
4
Lj1g3v3404290.1
– AT-hook protein 1 [Zea mays] gi|226532898|ref|NP_001149717.1|
GO terms
4
Lj2g3v2560000.1
– High mobility group protein [Canavalia gladiata] gi|1181589|dbj|BAA11766.1|
GO terms
4
Lj6g3v0423840.1
– HMGI/Y [Pisum sativum] gi|899367|emb|CAA61747.1|
GO terms
4
LotjaGi1g1v0092300.1
– HMG-Y-related protein A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|A0A1J7HLR9|A0A1J7HLR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0092300
GO terms
4
LotjaGi1g1v0569400.1
– AT hook motif DNA-binding family protein; TAIR: AT2G33620.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O22812|AHL10_ARATH AT-hook motif nuclear-localized protein 10; TrEMBL-Plants: tr|V7AUS6|V7AUS6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0569400
GO terms
4
LotjaGi2g1v0198500.1
– Histone H1; TAIR: AT1G48620.1 high mobility group A5; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|V7CTB3|V7CTB3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0198500
GO terms
4
LotjaGi3g1v0261700_LC.1
– Transcription factor jumonji domain-containing protein, putative isoform 2; TAIR: AT3G18035.2 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|P52927|HMGA2_MOUSE High mobility group protein HMGI-C; TrEMBL-Plants: tr|A0A061G1U9|A0A061G1U9_THECC Transcription factor jumonji domain-containing protein, putative isoform 1; Found in the gene: LotjaGi3g1v0261700_LC
GO terms
4
LotjaGi6g1v0056500.1
– HMG-Y-related protein A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|A0A1J7HLR9|A0A1J7HLR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0056500
GO terms
4
LotjaGi6g1v0056600.1
– HMG-Y-related A; TAIR: AT1G14900.1 high mobility group A; Swiss-Prot: sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A; TrEMBL-Plants: tr|G7J9E3|G7J9E3_MEDTR Linker histone H1 and h5 family protein; Found in the gene: LotjaGi6g1v0056600
GO terms
4

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0006355
Biological process Regulation of transcription, DNA-templated 1 10.00