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IPR007125 is a Histone H2A/H2B/H3.
<p>Five major families of histones exist: H1/H5, H2A, H2B, H3, and H4 [[cite:PUB00066796]]. Histones H2A, H2B, H3 and H4 are known as the core histones, while histones H1 and H5 are known as the linker histones. The core histones together with some other DNA binding proteins form a superfamily defined by a common fold and distant sequence similarities [[cite:PUB00005743], [cite:PUB00005777]]. Some proteins contain local homology domains related to the histone fold [[cite:PUB00004260]].</p> <p>This entry represents a domain found in histones H2A, H2B and H3. This domain can also be found in transcription factors, such as OsNF-YC2 from rice [[cite:PUB00094278]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Histone H3.3 [Arabidopsis thaliana] gi|15236103|ref|NP_195713.1| | 12 | ||
| – | Hypothetical protein CBG05841 [Caenorhabditis briggsae] gi|268536014|ref|XP_002633142.1| | 11 | ||
| – | Histone H2A [Aegilops tauschii] gi|475577812|gb|EMT17934.1| | 15 | ||
| – | Histone H2A [Aegilops tauschii] gi|475577812|gb|EMT17934.1| | 15 | ||
| – | Histone H3, expressed [Triticum aestivum] gi|300681467|emb|CBH32561.1| | 12 | ||
| – | Histone H3 [Zea mays] gi|195611240|gb|ACG27450.1| | 12 | ||
| – | PREDICTED: histone H3.2-like [Solanum lycopersicum] gi|460414483|ref|XP_004252600.1| | 12 | ||
| – | Histone 2 [Populus trichocarpa] gi|224143081|ref|XP_002324843.1| | 14 | ||
| – | Histone H3.3 [Arabidopsis thaliana] gi|15236103|ref|NP_195713.1| | 11 | ||
| – | PREDICTED: histone H2A variant 1-like [Fragaria vesca subsp]. vesca] gi|470108692|ref|XP_004290644.1| | 14 | ||
| – | Histone H2A [Naegleria gruberi] gi|290995687|ref|XP_002680414.1| | 16 | ||
| – | Histone H2A [Medicago truncatula] gi|357511939|ref|XP_003626258.1| | 15 | ||
| – | PREDICTED: histone H2AX [Vitis vinifera] gi|225451096|ref|XP_002265878.1| | 15 | ||
| – | Histone H3.3 [Arabidopsis thaliana] gi|15236103|ref|NP_195713.1| | 12 | ||
| – | Histone H3.2 [Arabidopsis lyrata subsp]. lyrata] gi|297808967|ref|XP_002872367.1| | 11 | ||
| – | Histone H2B [Medicago truncatula] gi|357472693|ref|XP_003606631.1| | 11 | ||
| – | Histone H2 [Populus trichocarpa] gi|224113151|ref|XP_002316408.1| | 10 | ||
| – | Histone H2B [Medicago truncatula] gi|357472693|ref|XP_003606631.1| | 11 | ||
| – | PREDICTED: probable histone H2A.3 [Vitis vinifera] gi|225469181|ref|XP_002275483.1| | 15 | ||
| – | Histone H2B [Medicago truncatula] gi|357472693|ref|XP_003606631.1| | 11 | ||
| – | Protein HIS-42 [Caenorhabditis elegans] gi|17532993|ref|NP_496899.1| | 10 | ||
| – | Histone H3, expressed [Triticum aestivum] gi|300681467|emb|CBH32561.1| | 12 | ||
| – | Histone 2 [Populus trichocarpa] gi|224143081|ref|XP_002324843.1| | 13 | ||
| – | Histone 2 [Populus trichocarpa] gi|224092416|ref|XP_002309600.1| | 15 | ||
| – | Histone H2A [Medicago truncatula] gi|357440545|ref|XP_003590550.1| | 14 | ||
| – | Histone H3 [Zea mays] gi|195606516|gb|ACG25088.1| | 12 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|D7M7R3|D7M7R3_ARALL Histone H3; Found in the gene: LotjaGi1g1v0091100 | 12 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|D7M7R3|D7M7R3_ARALL Histone H3; Found in the gene: LotjaGi1g1v0091300 | 12 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|A0A067J8V0|A0A067J8V0_JATCU Uncharacterized protein; Found in the gene: LotjaGi1g1v0204100 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi1g1v0204100 | 13 | ||
| – | Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q9C944|H2AV3_ARATH Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SBH0|I3SBH0_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0387400 | 15 | ||
| – | Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q8H7Y8|H2AV1_ORYSJ Probable histone H2A variant 1; TrEMBL-Plants: tr|I3SBH0|I3SBH0_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0387400 | 12 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi1g1v0447600 | 12 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi1g1v0447600 | 12 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi1g1v0447700 | 12 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|A0A0D3AQT1|A0A0D3AQT1_BRAOL Uncharacterized protein; Found in the gene: LotjaGi1g1v0447700 | 12 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi1g1v0447700 | 12 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi1g1v0512200 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi1g1v0512200 | 13 | ||
| – | Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I1H6W0|I1H6W0_BRADI Histone H2A; Found in the gene: LotjaGi1g1v0575700 | 16 | ||
| – | Histone H2B; TAIR: AT2G37470.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|I3SY24|I3SY24_LOTJA Histone H2B; Found in the gene: LotjaGi1g1v0698500 | 12 | ||
| – | Histone H2A; TAIR: AT3G54560.1 histone H2A 11; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|I3SM38|I3SM38_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0714800 | 14 | ||
| – | Histone H2A; TAIR: AT1G08880.1 Histone superfamily protein; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|V7CZN0|V7CZN0_PHAVU Histone H2A; Found in the gene: LotjaGi1g1v0732900 | 16 | ||
| – | Histone H2A; TAIR: AT5G27670.1 histone H2A 7; Swiss-Prot: sp|Q94F49|H2A5_ARATH Probable histone H2A.5; TrEMBL-Plants: tr|V7BPQ3|V7BPQ3_PHAVU Histone H2A; Found in the gene: LotjaGi1g1v0771500 | 16 | ||
| – | Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300 | 16 | ||
| – | Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300 | 16 | ||
| – | Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300 | 16 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|G7JTQ7|G7JTQ7_MEDTR Histone H2B; Found in the gene: LotjaGi2g1v0366200 | 11 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|M5WKF6|M5WKF6_PRUPE Histone H2B; Found in the gene: LotjaGi2g1v0370400 | 12 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|O22582|H2B_GOSHI Histone H2B; TrEMBL-Plants: tr|M1BEW2|M1BEW2_SOLTU Histone H2B; Found in the gene: LotjaGi2g1v0370600 | 12 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|M5WKF6|M5WKF6_PRUPE Histone H2B; Found in the gene: LotjaGi2g1v0370600 | 12 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi2g1v0382900 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi2g1v0382900 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi2g1v0382900 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi2g1v0382900 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi2g1v0382900 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi2g1v0382900 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi2g1v0382900 | 13 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|P93354|H2B_TOBAC Histone H2B; TrEMBL-Plants: tr|I3S6P0|I3S6P0_LOTJA Histone H2B; Found in the gene: LotjaGi3g1v0169600 | 12 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|P93354|H2B_TOBAC Histone H2B; TrEMBL-Plants: tr|I3S6P0|I3S6P0_LOTJA Histone H2B; Found in the gene: LotjaGi3g1v0169600 | 12 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|P93354|H2B_TOBAC Histone H2B; TrEMBL-Plants: tr|I3S6P0|I3S6P0_LOTJA Histone H2B; Found in the gene: LotjaGi3g1v0169600 | 12 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|G7JTQ9|G7JTQ9_MEDTR Histone H2B; Found in the gene: LotjaGi3g1v0169700 | 12 | ||
| – | Histone H2A; TAIR: AT5G54640.1 Histone superfamily protein; Swiss-Prot: sp|Q9LD28|H2A6_ARATH Histone H2A.6; TrEMBL-Plants: tr|I1LUS3|I1LUS3_SOYBN Histone H2A; Found in the gene: LotjaGi3g1v0233900 | 16 | ||
| – | Histone H2A; TAIR: AT4G27230.1 histone H2A 2; Swiss-Prot: sp|O81826|H2A3_ARATH Probable histone H2A.3; TrEMBL-Plants: tr|T2DMX9|T2DMX9_PHAVU Histone H2A; Found in the gene: LotjaGi3g1v0233900 | 16 | ||
| – | Histone H2A; TAIR: AT1G51060.1 histone H2A 10; Swiss-Prot: sp|Q9C681|H2A1_ARATH Probable histone H2A.1; TrEMBL-Plants: tr|A0A1J7HRN0|A0A1J7HRN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0234200 | 16 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi3g1v0248100 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi3g1v0248100 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|W5GCP8|W5GCP8_WHEAT Histone H3; Found in the gene: LotjaGi3g1v0248100 | 11 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|V7CZU0|V7CZU0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0248100 | 22 | ||
| – | Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I3SUS3|I3SUS3_LOTJA Histone H2A; Found in the gene: LotjaGi3g1v0281000 | 16 | ||
| – | Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I3T2M3|I3T2M3_LOTJA Histone H2A; Found in the gene: LotjaGi3g1v0281100 | 16 | ||
| – | Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|Q9M531|H2A_EUPES Histone H2A; TrEMBL-Plants: tr|V4LCQ3|V4LCQ3_EUTSA Histone H2A; Found in the gene: LotjaGi3g1v0281600 | 16 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi3g1v0290800 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|A0A0D3GD34|A0A0D3GD34_9ORYZ Uncharacterized protein; Found in the gene: LotjaGi3g1v0290800 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi3g1v0290800 | 13 | ||
| – | Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|K3XMR4|K3XMR4_SETIT Histone H2A; Found in the gene: LotjaGi3g1v0367900 | 16 | ||
| – | Histone H2B; TAIR: AT2G28720.1 Histone superfamily protein; Swiss-Prot: sp|Q5BJA5|H2B1_DANRE Histone H2B 1/2; TrEMBL-Plants: tr|I1LKY2|I1LKY2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0483400 | 12 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|D8QUA3|D8QUA3_SELML Histone H3; Found in the gene: LotjaGi3g1v0495500 | 11 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi3g1v0495500 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi3g1v0495500 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi3g1v0495500 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|D8QUA3|D8QUA3_SELML Histone H3; Found in the gene: LotjaGi3g1v0495500 | 11 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|D8QUA3|D8QUA3_SELML Histone H3; Found in the gene: LotjaGi3g1v0495500 | 11 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|A0A0B2S4D2|A0A0B2S4D2_GLYSO Histone H3; Found in the gene: LotjaGi3g1v0495600 | 12 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|D8QUA3|D8QUA3_SELML Histone H3; Found in the gene: LotjaGi3g1v0495800 | 11 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E1|H32_LILLO Histone H3.2; TrEMBL-Plants: tr|A0A0B2S4D2|A0A0B2S4D2_GLYSO Histone H3; Found in the gene: LotjaGi3g1v0495900 | 12 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0064100 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0064100 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0064100 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0064100 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0064100 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0064100 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi4g1v0094100 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi4g1v0094100 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|V7CZU0|V7CZU0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0094100 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi4g1v0094100 | 13 | ||
| – | Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q9C944|H2AV3_ARATH Probable histone H2A variant 3; TrEMBL-Plants: tr|D7SUM0|D7SUM0_VITVI Histone H2A; Found in the gene: LotjaGi4g1v0137000_LC | 14 | ||
| – | Histone H2A; TAIR: AT2G38810.1 histone H2A 8; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|A0A0R0GJB9|A0A0R0GJB9_SOYBN Histone H2A; Found in the gene: LotjaGi4g1v0137000_LC | 12 | ||
| – | Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3S6W2|I3S6W2_LOTJA Histone H2A; Found in the gene: LotjaGi4g1v0266100 | 16 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0407000 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0407000 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0407000 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi5g1v0009100 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi5g1v0009100 | 13 | ||
| – | Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SSH5|I3SSH5_LOTJA Histone H2A; Found in the gene: LotjaGi5g1v0061500 | 16 | ||
| – | Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|A0A164U3L0|A0A164U3L0_DAUCA Histone H2A; Found in the gene: LotjaGi5g1v0061500 | 13 | ||
| – | Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|A0A164U3L0|A0A164U3L0_DAUCA Histone H2A; Found in the gene: LotjaGi5g1v0061500 | 13 | ||
| – | Histone H2A; TAIR: AT3G54560.1 histone H2A 11; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|A0A164U3L0|A0A164U3L0_DAUCA Histone H2A; Found in the gene: LotjaGi5g1v0061500 | 13 | ||
| – | Histone H2B; TAIR: AT2G37470.1 Histone superfamily protein; Swiss-Prot: sp|Q9ZUS0|H2B4_ARATH Histone H2B.4; TrEMBL-Plants: tr|I3T995|I3T995_LOTJA Histone H2B; Found in the gene: LotjaGi5g1v0069100 | 12 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|D8QUA3|D8QUA3_SELML Histone H3; Found in the gene: LotjaGi5g1v0108600 | 12 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|D8QUA3|D8QUA3_SELML Histone H3; Found in the gene: LotjaGi5g1v0108600 | 12 | ||
| – | Histone H2A; TAIR: AT3G54560.1 histone H2A 11; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SST0|I3SST0_LOTJA Histone H2A; Found in the gene: LotjaGi5g1v0173900 | 14 | ||
| – | Histone H2A; TAIR: AT3G54560.1 histone H2A 11; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SST0|I3SST0_LOTJA Histone H2A; Found in the gene: LotjaGi5g1v0173900 | 14 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|O65819|H2B3_SOLLC Histone H2B.3; TrEMBL-Plants: tr|I3SW26|I3SW26_LOTJA Histone H2B; Found in the gene: LotjaGi5g1v0253600 | 12 | ||
| – | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600 | 12 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0081600 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0090900 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0090900 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0090900 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091000 | 11 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091000 | 11 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091000 | 11 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091200 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091200 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091200 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091300 | 12 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091300 | 12 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091300 | 12 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091300 | 11 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091300 | 12 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091300 | 12 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091500 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091500 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0091500 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0104000 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0104000 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0104000 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0104000 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0104000 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0104000 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0104000 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P84227|H32_BOVIN Histone H3.2; TrEMBL-Plants: tr|M7ZPB4|M7ZPB4_TRIUA Histone H3; Found in the gene: LotjaGi6g1v0129400 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P84227|H32_BOVIN Histone H3.2; TrEMBL-Plants: tr|M7ZPB4|M7ZPB4_TRIUA Histone H3; Found in the gene: LotjaGi6g1v0129400 | 13 | ||
| – | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P84227|H32_BOVIN Histone H3.2; TrEMBL-Plants: tr|M7ZPB4|M7ZPB4_TRIUA Histone H3; Found in the gene: LotjaGi6g1v0129400 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0140100 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0140100 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0140100 | 13 | ||
| – | Histone H3 like protein; TAIR: AT1G01370.1 Histone superfamily protein; Swiss-Prot: sp|Q8RVQ9|HTR12_ARATH Histone H3-like centromeric protein HTR12; TrEMBL-Plants: tr|W5S5L3|W5S5L3_LOTJA Centromere-specific histone H3 variant; Found in the gene: LotjaGi6g1v0198700 | 12 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0217300 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0217300 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0217300 | 13 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|A0A0B2S5G5|A0A0B2S5G5_GLYSO 3-isopropylmalate dehydratase; Found in the gene: LotjaGi6g1v0217300 | 11 | ||
| – | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0217300 | 13 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 0.63 |