Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | Lj1g3v4450430 |
| Transcript ID | Lj1g3v4450430.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: indole-3-glycerol phosphate lyase, chloroplastic [Glycine max] gi|356572236|ref|XP_003554276.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 30 | 97 | 68 | 2.30E-56 | – | |
| PANTHER | 30 | 97 | 68 | 2.30E-56 | – | |
| Gene3D | 50 | 310 | 261 | 5.50E-105 | ||
| SUPERFAMILY | 50 | 290 | 241 | 3.20E-89 | ||
| TIGRFAM | 54 | 307 | 254 | 4.70E-93 | ||
| Pfam | 54 | 309 | 256 | 1.80E-96 | ||
| Hamap | 60 | 309 | 250 | 36.671 | ||
| CDD | 64 | 307 | 244 | 5.61E-116 | ||
| ProSitePatterns | 94 | 107 | 14 | – | ||
| PANTHER | 120 | 216 | 97 | 2.30E-56 | – | |
| PANTHER | 120 | 216 | 97 | 2.30E-56 | – | |
| Coils | 231 | 251 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Tryptophan synthase activity | Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O. | ||
| Biological process | Tryptophan metabolic process | The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. |
Expression pattern of Lj1g3v4450430.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…
A list of the top 25 highly co-expressed genes of Lj1g3v4450430.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.