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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4578470 |
| Transcript ID | Lj1g3v4578470.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Ankyrin repeat-containing protein [Medicago truncatula] gi|357510531|ref|XP_003625554.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 482 | 482 | 0 | – | |
| PANTHER | 1 | 482 | 482 | 0 | – | |
| Phobius | 1 | 317 | 317 | – | – | |
| Gene3D | 20 | 76 | 57 | 2.70E-11 | ||
| SUPERFAMILY | 21 | 244 | 224 | 1.19E-44 | ||
| CDD | 23 | 152 | 130 | 2.18E-23 | – | |
| Pfam | 25 | 88 | 64 | 4.00E-11 | ||
| SMART | 28 | 57 | 30 | 13 | ||
| ProSiteProfiles | 28 | 262 | 235 | 42.601 | ||
| SMART | 63 | 92 | 30 | 2 | ||
| ProSiteProfiles | 63 | 90 | 28 | 8.923 | ||
| Gene3D | 77 | 146 | 70 | 2.50E-19 | ||
| SMART | 97 | 126 | 30 | 18 | ||
| Pfam | 97 | 156 | 60 | 2.40E-10 | ||
| CDD | 100 | 220 | 121 | 2.83E-27 | – | |
| ProSiteProfiles | 131 | 163 | 33 | 11.594 | ||
| SMART | 131 | 160 | 30 | 2.20E-04 | ||
| Gene3D | 147 | 241 | 95 | 9.90E-23 | ||
| Pfam | 163 | 224 | 62 | 2.20E-09 | ||
| SMART | 165 | 194 | 30 | 0.051 | ||
| ProSiteProfiles | 165 | 197 | 33 | 8.79 | ||
| CDD | 197 | 269 | 73 | 1.16E-06 | – | |
| ProSiteProfiles | 199 | 232 | 34 | 9.404 | ||
| SMART | 199 | 229 | 31 | 0.021 | ||
| Pfam | 315 | 419 | 105 | 4.40E-24 | ||
| TMHMM | 318 | 340 | 23 | – | – | |
| Phobius | 318 | 340 | 23 | – | – | |
| Phobius | 341 | 359 | 19 | – | – | |
| TMHMM | 360 | 382 | 23 | – | – | |
| Phobius | 360 | 382 | 23 | – | – | |
| Phobius | 383 | 401 | 19 | – | – | |
| TMHMM | 402 | 419 | 18 | – | – | |
| Phobius | 402 | 420 | 19 | – | – | |
| Phobius | 421 | 425 | 5 | – | – | |
| Phobius | 426 | 451 | 26 | – | – | |
| TMHMM | 429 | 451 | 23 | – | – | |
| Phobius | 452 | 489 | 38 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v4578470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4578470.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.