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Lj1g3v4657810.1

Overview

Field Value
Gene ID Lj1g3v4657810
Transcript ID Lj1g3v4657810.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max] gi|356535937|ref|XP_003536498.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 34 34 – –
PANTHER
PTHR24031
8 637 630 0 –
PANTHER
PTHR24031:SF330
8 637 630 0 –
Gene3D
G3DSA:3.40.50.300
48 268 221 1.50E-67
IPR027417
ProSiteProfiles
PS51195
53 81 29 7.211
IPR014014
CDD
cd00268
60 261 202 6.36E-69 –
SMART
SM00487
72 284 213 2.80E-48
IPR014001
Pfam
PF00270
77 254 178 1.30E-44
IPR011545
ProSiteProfiles
PS51192
84 266 183 28.554
IPR014001
SUPERFAMILY
SSF52540
131 410 280 8.90E-62
IPR027417
ProSitePatterns
PS00039
210 218 9 –
IPR000629
Gene3D
G3DSA:3.40.50.300
270 429 160 5.90E-42
IPR027417
CDD
cd00079
281 406 126 2.51E-32 –
ProSiteProfiles
PS51194
295 437 143 20.293
IPR001650
Pfam
PF00271
300 398 99 1.40E-25
IPR001650
SMART
SM00490
317 398 82 2.80E-25
IPR001650
Pfam
PF08152
487 582 96 1.50E-28
IPR012562
SUPERFAMILY
SSF54928
491 574 84 1.20E-23
IPR012677
CDD
cd12937
494 579 86 5.62E-35 –
MobiDBLite
mobidb-lite
583 638 56 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0004386
Molecular function Helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj1g3v4657810.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4657810.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.