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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4668250 |
| Transcript ID | Lj1g3v4668250.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: WD repeat-containing protein 3-like [Glycine max] gi|356505281|ref|XP_003521420.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 941 | 941 | 0 | – | |
| PANTHER | 1 | 941 | 941 | 0 | – | |
| Gene3D | 25 | 269 | 245 | 1.50E-50 | ||
| SMART | 48 | 93 | 46 | 0.0061 | ||
| ProSiteProfiles | 61 | 706 | 646 | 66.782 | ||
| Pfam | 63 | 91 | 29 | 0.021 | ||
| SUPERFAMILY | 66 | 227 | 162 | 1.26E-65 | ||
| SMART | 96 | 135 | 40 | 1.10E-09 | ||
| Pfam | 97 | 135 | 39 | 9.50E-06 | ||
| CDD | 99 | 518 | 420 | 2.11E-43 | – | |
| ProSiteProfiles | 103 | 136 | 34 | 15.154 | ||
| PRINTS | 122 | 136 | 15 | 5.40E-06 | ||
| ProSitePatterns | 122 | 136 | 15 | – | ||
| SMART | 138 | 177 | 40 | 4.50E-07 | ||
| Pfam | 143 | 177 | 35 | 5.00E-05 | ||
| ProSiteProfiles | 145 | 186 | 42 | 15.421 | ||
| ProSitePatterns | 164 | 178 | 15 | – | ||
| PRINTS | 164 | 178 | 15 | 5.40E-06 | ||
| SMART | 180 | 219 | 40 | 5.80E-06 | ||
| Pfam | 182 | 218 | 37 | 7.00E-05 | ||
| ProSiteProfiles | 187 | 221 | 35 | 10.508 | ||
| SMART | 244 | 284 | 41 | 230 | ||
| Gene3D | 270 | 291 | 22 | 3.40E-31 | ||
| MobiDBLite | 293 | 338 | 46 | – | – | |
| Gene3D | 348 | 520 | 173 | 3.40E-31 | ||
| SUPERFAMILY | 396 | 677 | 282 | 1.26E-65 | ||
| SMART | 398 | 436 | 39 | 4.80E-04 | ||
| CDD | 405 | 697 | 293 | 5.87E-60 | – | |
| Pfam | 405 | 436 | 32 | 0.006 | ||
| ProSiteProfiles | 405 | 445 | 41 | 10.609 | ||
| SMART | 439 | 476 | 38 | 12 | ||
| SMART | 479 | 518 | 40 | 3.60E-05 | ||
| Pfam | 481 | 517 | 37 | 0.0054 | ||
| ProSiteProfiles | 486 | 518 | 33 | 11.812 | ||
| SMART | 533 | 571 | 39 | 0.91 | ||
| Gene3D | 537 | 708 | 172 | 5.70E-48 | ||
| SMART | 574 | 613 | 40 | 5.00E-08 | ||
| Pfam | 579 | 612 | 34 | 1.10E-05 | ||
| ProSiteProfiles | 581 | 622 | 42 | 13.717 | ||
| PRINTS | 600 | 614 | 15 | 5.40E-06 | ||
| SMART | 616 | 655 | 40 | 7.90E-05 | ||
| ProSiteProfiles | 623 | 664 | 42 | 12.413 | ||
| SMART | 658 | 697 | 40 | 1.50E-08 | ||
| Pfam | 662 | 697 | 36 | 6.30E-07 | ||
| ProSiteProfiles | 665 | 697 | 33 | 13.416 | ||
| Coils | 765 | 785 | 21 | – | – | |
| Pfam | 800 | 896 | 97 | 1.00E-12 | ||
| MobiDBLite | 919 | 943 | 25 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj1g3v4668250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4668250.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.