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Lj1g3v4753210.1

Overview

Field Value
Gene ID Lj1g3v4753210
Transcript ID Lj1g3v4753210.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: anaphase-promoting complex subunit cdc20-like [Cicer arietinum] gi|502112266|ref|XP_004494277.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19918
31 434 404 1.10E-245
IPR033010
PANTHER
PTHR19918:SF12
31 434 404 1.10E-245 –
MobiDBLite
mobidb-lite
98 126 29 – –
SUPERFAMILY
SSF50978
133 425 293 4.88E-57
IPR017986
Gene3D
G3DSA:2.130.10.10
140 431 292 3.00E-61
IPR015943
ProSiteProfiles
PS50294
154 433 280 31.244
IPR017986
CDD
cd00200
155 424 270 6.15E-39 –
SMART
SM00320
166 204 39 5.40E-04
IPR001680
Pfam
PF12894
171 229 59 2.20E-07
IPR024977
ProSiteProfiles
PS50082
172 213 42 11.712
IPR001680
SMART
SM00320
207 245 39 3.6
IPR001680
SMART
SM00320
249 288 40 2.20E-08
IPR001680
Pfam
PF00400
253 288 36 7.00E-07
IPR001680
ProSiteProfiles
PS50082
256 288 33 14.552
IPR001680
SMART
SM00320
297 339 43 0.0061
IPR001680
Pfam
PF00400
301 339 39 0.02
IPR001680
ProSitePatterns
PS00678
326 340 15 –
IPR019775
SMART
SM00320
342 382 41 270
IPR001680
SMART
SM00320
385 424 40 1.80E-05
IPR001680
Pfam
PF00400
390 424 35 0.004
IPR001680
ProSiteProfiles
PS50082
392 425 34 12.814
IPR001680
ProSitePatterns
PS00678
411 425 15 –
IPR019775
MobiDBLite
mobidb-lite
429 450 22 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0010997
Molecular function Anaphase-promoting complex binding Interacting selectively and non-covalently with an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis.
Subterm of
GO:0097027
Molecular function Ubiquitin-protein transferase activator activity Increases the activity of a ubiquitin-protein transferase, an enzyme that catalyzes the covalent attachment of ubiquitin to lysine in a substrate protein.
Subterm of
GO:1904668
Biological process Positive regulation of ubiquitin protein ligase activity Any process that activates or increases the frequency, rate or extent of ubiquitin protein ligase activity.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v4753210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4753210.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.