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Lj1g3v4789600.1

Overview

Field Value
Gene ID Lj1g3v4789600
Transcript ID Lj1g3v4789600.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: peptide chain release factor 2-like [Glycine max] gi|356571075|ref|XP_003553706.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 30 30 – –
PANTHER
PTHR11075
76 474 399 1.50E-228 –
PANTHER
PTHR11075:SF6
76 474 399 1.50E-228
IPR004374
Gene3D
G3DSA:1.20.58.410
106 216 111 8.90E-25 –
TIGRFAM
TIGR00020
108 465 358 9.00E-132
IPR004374
SUPERFAMILY
SSF75620
130 466 337 1.22E-114 –
Pfam
PF03462
131 320 190 2.60E-52
IPR005139
Coils
Coil
170 190 21 – –
SMART
SM00937
185 295 111 4.50E-40
IPR005139
Gene3D
G3DSA:3.30.160.20
331 406 76 1.00E-32
IPR014720
Pfam
PF00472
332 439 108 2.40E-36
IPR000352
ProSitePatterns
PS00745
346 362 17 –
IPR000352
Coils
Coil
389 409 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003747
Molecular function Translation release factor activity Involved in catalyzing the release of a nascent polypeptide chain from a ribosome.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006415
Biological process Translational termination The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
Subterm of
Part of
GO:0016149
Molecular function Translation release factor activity, codon specific A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v4789600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4789600.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.