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Lj1g3v4830340.1

Overview

Field Value
Gene ID Lj1g3v4830340
Transcript ID Lj1g3v4830340.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: peptide chain release factor 1-like [Glycine max] gi|356503962|ref|XP_003520768.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11075
49 411 363 7.60E-186 –
PANTHER
PTHR11075:SF9
49 411 363 7.60E-186 –
TIGRFAM
TIGR00019
59 411 353 3.60E-129
IPR004373
Pfam
PF03462
66 258 193 6.40E-57
IPR005139
SUPERFAMILY
SSF75620
82 402 321 2.49E-112 –
Gene3D
G3DSA:1.20.58.410
83 144 62 8.50E-05 –
Coils
Coil
106 126 21 – –
SMART
SM00937
118 233 116 5.50E-46
IPR005139
Gene3D
G3DSA:3.30.160.20
265 337 73 6.10E-31
IPR014720
Pfam
PF00472
266 375 110 4.30E-36
IPR000352

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003747
Molecular function Translation release factor activity Involved in catalyzing the release of a nascent polypeptide chain from a ribosome.
Subterm of
GO:0006415
Biological process Translational termination The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
Subterm of
Part of
GO:0016149
Molecular function Translation release factor activity, codon specific A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj1g3v4830340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4830340.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.