Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v4862890.1

Overview

Field Value
Gene ID Lj1g3v4862890
Transcript ID Lj1g3v4862890.1
Lotus japonicus genome version MG20 v3.0
Description E3 ubiquitin-protein ligase MARCH3 [Medicago truncatula] gi|357511349|ref|XP_003625963.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23012
1 208 208 5.10E-106
IPR033275
Phobius
CYTOPLASMIC_DOMAIN
1 129 129 – –
PANTHER
PTHR23012:SF93
1 208 208 5.10E-106 –
ProSiteProfiles
PS51292
12 74 63 21.324
IPR011016
SUPERFAMILY
SSF57850
18 72 55 6.67E-15 –
SMART
SM00744
19 68 50 7.30E-19
IPR011016
Gene3D
G3DSA:3.30.40.10
19 72 54 4.90E-18
IPR013083
Pfam
PF12906
20 67 48 2.40E-14
IPR011016
Pfam
PF12428
73 180 108 1.00E-28
IPR022143
TMHMM
TMhelix
129 148 20 – –
Phobius
TRANSMEMBRANE
130 150 21 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
151 155 5 – –
Phobius
TRANSMEMBRANE
156 177 22 – –
TMHMM
TMhelix
158 180 23 – –
Phobius
CYTOPLASMIC_DOMAIN
178 208 31 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj1g3v4862890.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4862890.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.