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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR022143
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.813s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0223009.1
n.a. E3 ubiquitin-protein ligase MARCH6 [Medicago truncatula] gi|357442271|ref|XP_003591413.1| chr0 114789698 114792539 -
2 domain predictions
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Lj1g3v3244520.1
n.a. E3 ubiquitin-protein ligase MARCH2 [Medicago truncatula] gi|357508253|ref|XP_003624415.1| chr1 36686723 36689601 +
2 domain predictions
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Lj1g3v3244520.2
n.a. E3 ubiquitin-protein ligase MARCH2 [Medicago truncatula] gi|357508253|ref|XP_003624415.1| chr1 36686742 36689601 +
2 domain predictions
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Lj1g3v4862890.1
n.a. E3 ubiquitin-protein ligase MARCH3 [Medicago truncatula] gi|357511349|ref|XP_003625963.1| chr1 58833378 58835646 -
2 domain predictions
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Lj2g3v1277880.1
n.a. E3 ubiquitin-protein ligase MARCH3 [Medicago truncatula] gi|357486961|ref|XP_003613768.1| chr2 20502161 20505647 +
2 domain predictions
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Lj5g3v2166220.1
n.a. E3 ubiquitin-protein ligase MARCH2 [Medicago truncatula] gi|357444557|ref|XP_003592556.1| chr5 31005979 31010820 +
2 domain predictions
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LotjaGi1g1v0544500.1
n.a. RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT2G01275.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1; TrEMBL-Plants: tr|I3SA13|I3SA13_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0544500 LjG1.1_chr1 107406625 107412063 +
2 domain predictions
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LotjaGi1g1v0760400.1
n.a. RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT1G02610.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|G7KST0|G7KST0_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi1g1v0760400 LjG1.1_chr1 133352437 133355910 -
2 domain predictions
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LotjaGi1g1v0760400.2
n.a. RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT1G02610.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|G7KST0|G7KST0_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi1g1v0760400 LjG1.1_chr1 133352926 133355823 -
2 domain predictions
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LotjaGi2g1v0303500.1
n.a. RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT2G02960.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|A0A151TFN2|A0A151TFN2_CAJCA E3 ubiquitin-protein ligase Doa10; Found in the gene: LotjaGi2g1v0303500 LjG1.1_chr2 77730357 77734206 +
2 domain predictions
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LotjaGi2g1v0303500.2
n.a. RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT2G02960.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|A0A151TFN2|A0A151TFN2_CAJCA E3 ubiquitin-protein ligase Doa10; Found in the gene: LotjaGi2g1v0303500 LjG1.1_chr2 77730744 77733796 +
2 domain predictions
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LotjaGi5g1v0245700.1
n.a. RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT1G02610.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|I3T2U2|I3T2U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0245700 LjG1.1_chr5 55392714 55395405 -
2 domain predictions
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LotjaGi5g1v0245700.2
n.a. RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT1G02610.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|I3T2U2|I3T2U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0245700 LjG1.1_chr5 55393115 55395322 -
2 domain predictions
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LotjaGi5g1v0331400.1
n.a. RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT2G01275.3 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|G7IAT6|G7IAT6_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi5g1v0331400 LjG1.1_chr5 64834606 64840048 +
2 domain predictions
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LotjaGi5g1v0331400.2
n.a. RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT2G01275.3 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|G7IAT6|G7IAT6_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi5g1v0331400 LjG1.1_chr5 64834794 64840131 +
2 domain predictions
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