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Lj1g3v4916320.1

Overview

Field Value
Gene ID Lj1g3v4916320
Transcript ID Lj1g3v4916320.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description AAA ATPase, central region; L-lactate dehydrogenase [Medicago truncatula] gi|124360532|gb|ABN08542.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 34 34 – –
PANTHER
PTHR23077
59 91 33 5.50E-68 –
PANTHER
PTHR23077:SF9
59 91 33 5.50E-68 –
PANTHER
PTHR23077:SF9
121 158 38 5.50E-68 –
PANTHER
PTHR23077
121 158 38 5.50E-68 –
PANTHER
PTHR23077
197 460 264 5.50E-68 –
PANTHER
PTHR23077:SF9
197 460 264 5.50E-68 –
SUPERFAMILY
SSF52540
329 451 123 2.47E-13
IPR027417
CDD
cd00009
353 423 71 4.45E-06 –
Gene3D
G3DSA:3.40.50.300
356 495 140 6.60E-15
IPR027417
Pfam
PF00004
363 494 132 9.80E-10
IPR003959
PANTHER
PTHR23077:SF9
483 498 16 5.50E-68 –
PANTHER
PTHR23077
483 498 16 5.50E-68 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v4916320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4916320.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.