Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v5035010.1

Overview

Field Value
Gene ID Lj1g3v5035010
Transcript ID Lj1g3v5035010.1
Lotus japonicus genome version MG20 v3.0
Description transcription factor jumonji domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297814241|ref|XP_002875004.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 29 29 – –
PANTHER
PTHR12549:SF12
41 597 557 0 –
PANTHER
PTHR12549
41 597 557 0 –
ProSiteProfiles
PS50089
44 90 47 8.639
IPR001841
MobiDBLite
mobidb-lite
224 248 25 – –
SUPERFAMILY
SSF51197
367 462 96 5.49E-37 –
Gene3D
G3DSA:2.60.120.650
368 557 190 9.00E-07 –
SMART
SM00558
470 823 354 9.80E-69
IPR003347
ProSiteProfiles
PS51184
489 823 335 27.076
IPR003347
SUPERFAMILY
SSF51197
489 545 57 5.49E-37 –
MobiDBLite
mobidb-lite
592 611 20 – –
MobiDBLite
mobidb-lite
636 672 37 – –
PANTHER
PTHR12549
663 857 195 0 –
PANTHER
PTHR12549:SF12
663 857 195 0 –
SUPERFAMILY
SSF51197
708 842 135 5.49E-37 –
Pfam
PF02373
708 806 99 1.40E-15
IPR003347
Gene3D
G3DSA:2.60.120.650
724 806 83 9.00E-07 –
Coils
Coil
858 860 3 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj1g3v5035010.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v5035010.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.