Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF02373
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 54 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.019s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0106299.1
n.a. PREDICTED: probable lysine-specific demethylase ELF6-like [Glycine max] gi|356533957|ref|XP_003535524.1| chr0 45691078 45700478 +
2 domain predictions
 –
Lj0g3v0183709.2
n.a. Lysine-specific demethylase 3B [Medicago truncatula] gi|357475971|ref|XP_003608271.1| chr0 89247448 89248723 -
2 domain predictions
 –
Lj0g3v0226069.1
n.a. PREDICTED: lysine-specific demethylase 3B-like [Glycine max] gi|356573855|ref|XP_003555071.1| chr0 116735228 116742657 +
2 domain predictions
 –
Lj0g3v0258129.1
n.a. PREDICTED: lysine-specific demethylase 5D-like [Glycine max] gi|356530249|ref|XP_003533695.1| chr0 134045107 134048028 -
2 domain predictions
 –
Lj0g3v0266619.1
n.a. PREDICTED: lysine-specific demethylase 3B-like [Glycine max] gi|356573855|ref|XP_003555071.1| chr0 138100557 138105880 -
2 domain predictions
 –
Lj0g3v0269949.1
n.a. Lysine-specific demethylase 3B [Medicago truncatula] gi|357488001|ref|XP_003614288.1| chr0 139855743 139860208 -
2 domain predictions
 –
Lj0g3v0287519.1
n.a. PREDICTED: probable lysine-specific demethylase ELF6-like [Cicer arietinum] gi|502118416|ref|XP_004496256.1| chr0 149393149 149395990 +
2 domain predictions
 –
Lj0g3v0351959.1
n.a. PREDICTED: lysine-specific demethylase REF6-like [Glycine max] gi|356518921|ref|XP_003528124.1| chr0 185067569 185075929 +
2 domain predictions
 –
Lj0g3v0359099.1
n.a. PsbP-like protein [Medicago truncatula] gi|357441701|ref|XP_003591128.1| chr0 189034071 189041131 +
2 domain predictions
 –
Lj1g3v0725870.1
n.a. ENBP1 [Medicago truncatula] gi|3492803|emb|CAA05489.1| chr1 9605996 9635902 +
2 domain predictions
 –
Lj1g3v4515430.1
n.a. PREDICTED: probable lysine-specific demethylase JMJ14-like isoform X1 [Cicer arietinum] gi|502110041|ref|XP_004493785.1| chr1 52895050 52901392 -
2 domain predictions
 –
Lj1g3v5035010.1
n.a. transcription factor jumonji domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297814241|ref|XP_002875004.1| chr1 61596294 61606021 -
2 domain predictions
 –
Lj2g3v1509500.1
n.a. PREDICTED: lysine-specific demethylase 5C-like [Glycine max] gi|356531447|ref|XP_003534289.1| chr2 23827135 23832890 -
2 domain predictions
 –
Lj2g3v2017660.2
n.a. Lysine-specific demethylase 5D [Medicago truncatula] gi|357481617|ref|XP_003611094.1| chr2 30947152 30961927 -
2 domain predictions
 –
Lj4g3v0134600.1
n.a. Lysine-specific demethylase 3A-B [Medicago truncatula] gi|357480367|ref|XP_003610469.1| chr4 1420333 1425509 +
2 domain predictions
 –
Lj4g3v1389260.1
n.a. PREDICTED: lysine-specific demethylase REF6-like [Cicer arietinum] gi|502176308|ref|XP_004515844.1| chr4 21659660 21668111 -
2 domain predictions
 –
Lj5g3v1265040.1
n.a. PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] gi|356574834|ref|XP_003555549.1| chr5 20155323 20164611 -
2 domain predictions
 –
Lj5g3v1811440.1
n.a. PREDICTED: probable lysine-specific demethylase ELF6-like [Cicer arietinum] gi|502118416|ref|XP_004496256.1| chr5 25871792 25878785 +
2 domain predictions
 –
Lj5g3v2258440.1
n.a. PREDICTED: lysine-specific demethylase 3B-like [Glycine max] gi|356573855|ref|XP_003555071.1| chr5 32790394 32809313 +
2 domain predictions
 –
Lj6g3v1116100.1
n.a. PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] gi|356532896|ref|XP_003535005.1| chr6 13781026 13788064 +
2 domain predictions
 –
Lj6g3v1812130.1
n.a. Lysine-specific demethylase 3A-B [Medicago truncatula] gi|357480367|ref|XP_003610469.1| chr6 20247769 20251187 +
2 domain predictions
 –
Lj6g3v2115770.1
n.a. Lysine-specific demethylase 3B [Medicago truncatula] gi|357475971|ref|XP_003608271.1| chr6 24638117 24643516 -
2 domain predictions
 –
LotjaGi1g1v0224300.1
n.a. Transcription factor jumonji domain-containing protein; TAIR: AT4G00990.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|K7M755|K7M755_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0224300 LjG1.1_chr1 50808555 50839615 -
2 domain predictions
 –
LotjaGi1g1v0231500.1
n.a. Zinc finger protein; TAIR: AT3G48430.1 relative of early flowering 6; Swiss-Prot: sp|Q9STM3|REF6_ARATH Lysine-specific demethylase REF6; TrEMBL-Plants: tr|I1JXF4|I1JXF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0231500 LjG1.1_chr1 54298398 54306996 +
2 domain predictions
 –
LotjaGi1g1v0707900.1
n.a. Lysine-specific demethylase; TAIR: AT1G08620.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|Q53WJ1|JM703_ORYSJ Lysine-specific demethylase JMJ703; TrEMBL-Plants: tr|K7MYQ0|K7MYQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0707900 LjG1.1_chr1 127628633 127635600 +
2 domain predictions
 –
LotjaGi1g1v0793400.1
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT4G00990.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|A0A072UFT5|A0A072UFT5_MEDTR Transcription factor jumonji (JmjC) domain protein; Found in the gene: LotjaGi1g1v0793400 LjG1.1_chr1 136470992 136481698 -
2 domain predictions
 –
LotjaGi1g1v0793400.2
n.a. Transcription factor jumonji domain-containing protein; TAIR: AT4G00990.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|A0A072UFT5|A0A072UFT5_MEDTR Transcription factor jumonji (JmjC) domain protein; Found in the gene: LotjaGi1g1v0793400 LjG1.1_chr1 136470992 136481698 -
2 domain predictions
 –
LotjaGi1g1v0793400.3
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT4G00990.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|A0A072UFT5|A0A072UFT5_MEDTR Transcription factor jumonji (JmjC) domain protein; Found in the gene: LotjaGi1g1v0793400 LjG1.1_chr1 136471753 136481638 -
2 domain predictions
 –
LotjaGi2g1v0021700.1
n.a. Lysine-specific demethylase; TAIR: AT5G46910.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|Q336N8|JM706_ORYSJ Lysine-specific demethylase JMJ706; TrEMBL-Plants: tr|K7LKB6|K7LKB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0021700 LjG1.1_chr2 7701183 7706947 +
2 domain predictions
 –
LotjaGi2g1v0336400.1
n.a. Lysine-specific demethylase; TAIR: AT5G46910.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|Q336N8|JM706_ORYSJ Lysine-specific demethylase JMJ706; TrEMBL-Plants: tr|A0A0B2RWY9|A0A0B2RWY9_GLYSO Lysine-specific demethylase REF6; Found in the gene: LotjaGi2g1v0336400 LjG1.1_chr2 81324278 81330737 -
2 domain predictions
 –
LotjaGi2g1v0433900.1
n.a. Lysine-specific demethylase; TAIR: AT1G63490.4 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A; TrEMBL-Plants: tr|K7LMP3|K7LMP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0433900 LjG1.1_chr2 93045415 93061638 -
2 domain predictions
 –
LotjaGi2g1v0433900.2
n.a. Lysine-specific demethylase; TAIR: AT1G63490.4 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A; TrEMBL-Plants: tr|K7LMP3|K7LMP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0433900 LjG1.1_chr2 93046189 93061632 -
2 domain predictions
 –
LotjaGi3g1v0379600.1
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT1G11950.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|A0A151SZ92|A0A151SZ92_CAJCA Lysine-specific demethylase 3B; Found in the gene: LotjaGi3g1v0379600 LjG1.1_chr3 77225752 77232674 -
2 domain predictions
 –
LotjaGi3g1v0458000.1
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT1G11950.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|V7BAD8|V7BAD8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0458000 LjG1.1_chr3 87213088 87220718 -
2 domain predictions
 –
LotjaGi3g1v0458000.2
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT3G07610.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|V7BAD8|V7BAD8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0458000 LjG1.1_chr3 87213339 87220685 -
2 domain predictions
 –
LotjaGi3g1v0530600.1
n.a. Lysine-specific demethylase; TAIR: AT5G46910.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|Q336N8|JM706_ORYSJ Lysine-specific demethylase JMJ706; TrEMBL-Plants: tr|I1L793|I1L793_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0530600 LjG1.1_chr3 94744671 94748726 +
2 domain predictions
 –
LotjaGi4g1v0011800.1
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT1G11950.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|K7L3Y3|K7L3Y3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0011800 LjG1.1_chr4 1480037 1486179 +
2 domain predictions
 –
LotjaGi4g1v0011800.2
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT1G11950.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|K7L3Y3|K7L3Y3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0011800 LjG1.1_chr4 1480094 1486043 +
2 domain predictions
 –
LotjaGi4g1v0011800.3
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT1G11950.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|K7L3Y3|K7L3Y3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0011800 LjG1.1_chr4 1481498 1485432 +
2 domain predictions
 –
LotjaGi4g1v0047800.1
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT4G21430.1 protein B160; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|I1KQR1|I1KQR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0047800 LjG1.1_chr4 5756072 5762303 +
2 domain predictions
 –
LotjaGi4g1v0225200.1
n.a. Zinc finger protein; TAIR: AT3G48430.1 relative of early flowering 6; Swiss-Prot: sp|Q9STM3|REF6_ARATH Lysine-specific demethylase REF6; TrEMBL-Plants: tr|A0A0S3R676|A0A0S3R676_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225200 LjG1.1_chr4 53081818 53090306 -
2 domain predictions
 –
LotjaGi4g1v0389900_LC.1
n.a. Lysine-specific demethylase; TAIR: AT2G34880.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|O64752|JMJ15_ARATH Lysine-specific demethylase JMJ15; TrEMBL-Plants: tr|K7L6B8|K7L6B8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0389900_LC LjG1.1_chr4 76829993 76831495 -
2 domain predictions
 –
LotjaGi5g1v0201800.1
n.a. Lysine-specific demethylase; TAIR: AT1G08620.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|C0SUT9|JMJ16_ARATH Putative lysine-specific demethylase JMJ16; TrEMBL-Plants: tr|K7N4Y4|K7N4Y4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0201800 LjG1.1_chr5 50161856 50171910 -
2 domain predictions
 –
LotjaGi5g1v0222200.1
n.a. Transcription factor jumonji domain protein; TAIR: AT1G09060.3 JmjC domain protein JMJ24; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|G7I8M9|G7I8M9_MEDTR Transcription factor jumonji domain protein; Found in the gene: LotjaGi5g1v0222200 LjG1.1_chr5 52908337 52916977 -
2 domain predictions
 –
LotjaGi5g1v0292200.1
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT1G62310.1 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|K7LLZ6|K7LLZ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0292200 LjG1.1_chr5 60926659 60935211 +
2 domain predictions
 –
LotjaGi5g1v0292500_LC.1
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT3G07610.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|A0A0B2RWE9|A0A0B2RWE9_GLYSO Lysine-specific demethylase 3B; Found in the gene: LotjaGi5g1v0292500_LC LjG1.1_chr5 60955396 60962225 +
2 domain predictions
 –
LotjaGi5g1v0351900.1
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT1G62310.1 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|K7LLZ6|K7LLZ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0351900 LjG1.1_chr5 66784765 66799103 +
2 domain predictions
 –
LotjaGi5g1v0351900.2
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT1G62310.1 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|K7LLZ6|K7LLZ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0351900 LjG1.1_chr5 66784765 66799103 +
2 domain predictions
 –
LotjaGi5g1v0351900.3
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT1G62310.1 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|K7LLZ6|K7LLZ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0351900 LjG1.1_chr5 66784765 66799103 +
2 domain predictions
 –
LotjaGi5g1v0351900.4
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT1G62310.1 transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|K7LLZ6|K7LLZ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0351900 LjG1.1_chr5 66784765 66799103 +
2 domain predictions
 –