Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003347
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 78 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.832s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0008949.1
n.a. Lysine-specific demethylase 3B [Medicago truncatula] gi|357475971|ref|XP_003608271.1| chr0 3632181 3638407 +
2 domain predictions
 –
Lj0g3v0106299.1
n.a. PREDICTED: probable lysine-specific demethylase ELF6-like [Glycine max] gi|356533957|ref|XP_003535524.1| chr0 45691078 45700478 +
4 domain predictions
 –
Lj0g3v0183709.1
n.a. Zinc finger, RING-type; Transcription factor jumonji, jmjC; Zinc finger, C2H2-type [Medicago truncatula] gi|124359679|gb|ABN06047.1| chr0 89247448 89253188 -
2 domain predictions
 –
Lj0g3v0183709.2
n.a. Lysine-specific demethylase 3B [Medicago truncatula] gi|357475971|ref|XP_003608271.1| chr0 89247448 89248723 -
4 domain predictions
 –
Lj0g3v0226069.1
n.a. PREDICTED: lysine-specific demethylase 3B-like [Glycine max] gi|356573855|ref|XP_003555071.1| chr0 116735228 116742657 +
4 domain predictions
 –
Lj0g3v0258129.1
n.a. PREDICTED: lysine-specific demethylase 5D-like [Glycine max] gi|356530249|ref|XP_003533695.1| chr0 134045107 134048028 -
4 domain predictions
 –
Lj0g3v0266619.1
n.a. PREDICTED: lysine-specific demethylase 3B-like [Glycine max] gi|356573855|ref|XP_003555071.1| chr0 138100557 138105880 -
4 domain predictions
 –
Lj0g3v0269949.1
n.a. Lysine-specific demethylase 3B [Medicago truncatula] gi|357488001|ref|XP_003614288.1| chr0 139855743 139860208 -
4 domain predictions
 –
Lj0g3v0287519.1
n.a. PREDICTED: probable lysine-specific demethylase ELF6-like [Cicer arietinum] gi|502118416|ref|XP_004496256.1| chr0 149393149 149395990 +
4 domain predictions
 –
Lj0g3v0317149.1
n.a. Lysine-specific demethylase NO66 [Medicago truncatula] gi|357479435|ref|XP_003610003.1| chr0 165676479 165683042 -
2 domain predictions
 –
Lj0g3v0317159.1
n.a. n.a. chr0 165680429 165683042 +
2 domain predictions
 –
Lj0g3v0317169.1
n.a. Lysine-specific demethylase NO66 [Medicago truncatula] gi|357479435|ref|XP_003610003.1| chr0 165680882 165682268 -
2 domain predictions
 –
Lj0g3v0351959.1
n.a. PREDICTED: lysine-specific demethylase REF6-like [Glycine max] gi|356518921|ref|XP_003528124.1| chr0 185067569 185075929 +
4 domain predictions
 –
Lj0g3v0359099.1
n.a. PsbP-like protein [Medicago truncatula] gi|357441701|ref|XP_003591128.1| chr0 189034071 189041131 +
4 domain predictions
 –
Lj0g3v0363059.1
n.a. PREDICTED: F-box protein At1g78280-like [Glycine max] gi|356515772|ref|XP_003526572.1| chr0 191474037 191483682 +
3 domain predictions
 –
Lj1g3v0342020.1
n.a. PREDICTED: jmjC domain-containing protein 4-like [Glycine max] gi|356507271|ref|XP_003522392.1| chr1 4116873 4120475 +
3 domain predictions
 –
Lj1g3v0342020.2
n.a. PREDICTED: jmjC domain-containing protein 4-like [Glycine max] gi|356507271|ref|XP_003522392.1| chr1 4116873 4121019 +
2 domain predictions
 –
Lj1g3v0725870.1
n.a. ENBP1 [Medicago truncatula] gi|3492803|emb|CAA05489.1| chr1 9605996 9635902 +
4 domain predictions
 –
Lj1g3v4515430.1
n.a. PREDICTED: probable lysine-specific demethylase JMJ14-like isoform X1 [Cicer arietinum] gi|502110041|ref|XP_004493785.1| chr1 52895050 52901392 -
4 domain predictions
 –
Lj1g3v4753250.1
n.a. PREDICTED: F-box protein At5g06550-like [Cicer arietinum] gi|502112299|ref|XP_004494286.1| chr1 56991260 56994149 -
3 domain predictions
 –
Lj1g3v5035010.1
n.a. transcription factor jumonji domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297814241|ref|XP_002875004.1| chr1 61596294 61606021 -
4 domain predictions
 –
Lj2g3v1509500.1
n.a. PREDICTED: lysine-specific demethylase 5C-like [Glycine max] gi|356531447|ref|XP_003534289.1| chr2 23827135 23832890 -
4 domain predictions
 –
Lj2g3v1561980.1
n.a. PREDICTED: jmjC domain-containing protein 7-like [Glycine max] gi|356540902|ref|XP_003538923.1| chr2 24966460 24969011 -
3 domain predictions
 –
Lj2g3v2017660.2
n.a. Lysine-specific demethylase 5D [Medicago truncatula] gi|357481617|ref|XP_003611094.1| chr2 30947152 30961927 -
4 domain predictions
 –
Lj3g3v3271520.1
n.a. PREDICTED: lysine-specific demethylase 8-like [Cicer arietinum] gi|502148319|ref|XP_004507119.1| chr3 40204995 40209306 -
3 domain predictions
 –
Lj3g3v3271520.2
n.a. PREDICTED: lysine-specific demethylase 8-like [Cicer arietinum] gi|502148319|ref|XP_004507119.1| chr3 40204995 40209306 -
3 domain predictions
 –
Lj4g3v0134600.1
n.a. Lysine-specific demethylase 3A-B [Medicago truncatula] gi|357480367|ref|XP_003610469.1| chr4 1420333 1425509 +
4 domain predictions
 –
Lj4g3v1389260.1
n.a. PREDICTED: lysine-specific demethylase REF6-like [Cicer arietinum] gi|502176308|ref|XP_004515844.1| chr4 21659660 21668111 -
4 domain predictions
 –
Lj4g3v2140190.1
n.a. Lysine-specific demethylase NO66 [Medicago truncatula] gi|357479435|ref|XP_003610003.1| chr4 29640142 29649093 +
3 domain predictions
 –
Lj4g3v2140190.2
n.a. Lysine-specific demethylase NO66 [Medicago truncatula] gi|357479435|ref|XP_003610003.1| chr4 29640142 29649093 +
3 domain predictions
 –
Lj4g3v2140200.1
n.a. n.a. chr4 29640982 29647274 -
3 domain predictions
 –
Lj5g3v1014690.1
n.a. JmjC domain-containing protein D [Medicago truncatula] gi|357440591|ref|XP_003590573.1| chr5 16287352 16295875 -
3 domain predictions
 –
Lj5g3v1014690.2
n.a. JmjC domain-containing protein D [Medicago truncatula] gi|357440591|ref|XP_003590573.1| chr5 16287352 16295875 -
3 domain predictions
 –
Lj5g3v1265040.1
n.a. PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] gi|356574834|ref|XP_003555549.1| chr5 20155323 20164611 -
4 domain predictions
 –
Lj5g3v1811440.1
n.a. PREDICTED: probable lysine-specific demethylase ELF6-like [Cicer arietinum] gi|502118416|ref|XP_004496256.1| chr5 25871792 25878785 +
4 domain predictions
 –
Lj5g3v2258440.1
n.a. PREDICTED: lysine-specific demethylase 3B-like [Glycine max] gi|356573855|ref|XP_003555071.1| chr5 32790394 32809313 +
4 domain predictions
 –
Lj6g3v1116100.1
n.a. PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] gi|356532896|ref|XP_003535005.1| chr6 13781026 13788064 +
4 domain predictions
 –
Lj6g3v1812130.1
n.a. Lysine-specific demethylase 3A-B [Medicago truncatula] gi|357480367|ref|XP_003610469.1| chr6 20247769 20251187 +
4 domain predictions
 –
Lj6g3v2115770.1
n.a. Lysine-specific demethylase 3B [Medicago truncatula] gi|357475971|ref|XP_003608271.1| chr6 24638117 24643516 -
4 domain predictions
 –
LotjaGi1g1v0177500.1
n.a. JmjC domain-containing protein 4; TAIR: AT5G63080.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q08BY5|JMJD4_DANRE JmjC domain-containing protein 4; TrEMBL-Plants: tr|G7J4W1|G7J4W1_MEDTR Transcription factor, putative; Found in the gene: LotjaGi1g1v0177500 LjG1.1_chr1 34053464 34058396 +
3 domain predictions
 –
LotjaGi1g1v0224300.1
n.a. Transcription factor jumonji domain-containing protein; TAIR: AT4G00990.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|K7M755|K7M755_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0224300 LjG1.1_chr1 50808555 50839615 -
4 domain predictions
 –
LotjaGi1g1v0231500.1
n.a. Zinc finger protein; TAIR: AT3G48430.1 relative of early flowering 6; Swiss-Prot: sp|Q9STM3|REF6_ARATH Lysine-specific demethylase REF6; TrEMBL-Plants: tr|I1JXF4|I1JXF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0231500 LjG1.1_chr1 54298398 54306996 +
4 domain predictions
 –
LotjaGi1g1v0339200.1
n.a. F-box protein; TAIR: AT1G78280.1 transferases, transferring glycosyl groups; Swiss-Prot: sp|Q9M9E8|FB92_ARATH F-box protein At1g78280; TrEMBL-Plants: tr|I1K9W2|I1K9W2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0339200 LjG1.1_chr1 79996300 80005840 +
3 domain predictions
 –
LotjaGi1g1v0707900.1
n.a. Lysine-specific demethylase; TAIR: AT1G08620.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|Q53WJ1|JM703_ORYSJ Lysine-specific demethylase JMJ703; TrEMBL-Plants: tr|K7MYQ0|K7MYQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0707900 LjG1.1_chr1 127628633 127635600 +
4 domain predictions
 –
LotjaGi1g1v0740700.1
n.a. F-box and JmjC domain-containing protein; TAIR: AT5G06550.1 transferring glycosyl group transferase; Swiss-Prot: sp|Q67XX3|FB252_ARATH F-box protein At5g06550; TrEMBL-Plants: tr|A0A0S3SXE8|A0A0S3SXE8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0740700 LjG1.1_chr1 131464533 131467602 -
3 domain predictions
 –
LotjaGi1g1v0793400.1
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT4G00990.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|A0A072UFT5|A0A072UFT5_MEDTR Transcription factor jumonji (JmjC) domain protein; Found in the gene: LotjaGi1g1v0793400 LjG1.1_chr1 136470992 136481698 -
4 domain predictions
 –
LotjaGi1g1v0793400.2
n.a. Transcription factor jumonji domain-containing protein; TAIR: AT4G00990.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|A0A072UFT5|A0A072UFT5_MEDTR Transcription factor jumonji (JmjC) domain protein; Found in the gene: LotjaGi1g1v0793400 LjG1.1_chr1 136470992 136481698 -
4 domain predictions
 –
LotjaGi1g1v0793400.3
n.a. Transcription factor jumonji (JmjC) domain protein; TAIR: AT4G00990.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|A0A072UFT5|A0A072UFT5_MEDTR Transcription factor jumonji (JmjC) domain protein; Found in the gene: LotjaGi1g1v0793400 LjG1.1_chr1 136471753 136481638 -
4 domain predictions
 –
LotjaGi2g1v0021700.1
n.a. Lysine-specific demethylase; TAIR: AT5G46910.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|Q336N8|JM706_ORYSJ Lysine-specific demethylase JMJ706; TrEMBL-Plants: tr|K7LKB6|K7LKB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0021700 LjG1.1_chr2 7701183 7706947 +
4 domain predictions
 –
LotjaGi2g1v0336400.1
n.a. Lysine-specific demethylase; TAIR: AT5G46910.1 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; Swiss-Prot: sp|Q336N8|JM706_ORYSJ Lysine-specific demethylase JMJ706; TrEMBL-Plants: tr|A0A0B2RWY9|A0A0B2RWY9_GLYSO Lysine-specific demethylase REF6; Found in the gene: LotjaGi2g1v0336400 LjG1.1_chr2 81324278 81330737 -
4 domain predictions
 –