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Lj2g3v0025920.1

Overview

Field Value
Gene ID Lj2g3v0025920
Transcript ID Lj2g3v0025920.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: calcium-dependent protein kinase 10-like [Glycine max] gi|356507178|ref|XP_003522347.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24349
1 382 382 0 –
PANTHER
PTHR24349:SF167
1 382 382 0 –
Phobius
CYTOPLASMIC_DOMAIN
1 193 193 – –
Gene3D
G3DSA:3.30.200.20
5 108 104 5.50E-33 –
SUPERFAMILY
SSF56112
8 277 270 9.71E-86
IPR011009
CDD
cd05117
10 268 259 1.91E-136 –
ProSiteProfiles
PS50011
11 269 259 47.877
IPR000719
SMART
SM00220
11 269 259 1.60E-96
IPR000719
Pfam
PF00069
13 269 257 1.10E-74
IPR000719
ProSitePatterns
PS00107
17 40 24 –
IPR017441
Gene3D
G3DSA:1.10.510.10
109 298 190 5.40E-60 –
ProSitePatterns
PS00108
131 143 13 –
IPR008271
Phobius
TRANSMEMBRANE
194 212 19 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
213 382 170 – –
SUPERFAMILY
SSF47473
295 376 82 1.02E-20
IPR011992
Gene3D
G3DSA:1.10.238.10
300 333 34 2.30E-05
IPR011992
ProSiteProfiles
PS50222
312 347 36 15.518
IPR002048
SMART
SM00054
316 344 29 1.50E-06
IPR002048
CDD
cd00051
317 375 59 1.16E-15
IPR002048
Pfam
PF13499
317 376 60 1.50E-11
IPR002048
ProSitePatterns
PS00018
325 337 13 –
IPR018247
Gene3D
G3DSA:1.10.238.10
334 377 44 2.50E-15
IPR011992
ProSiteProfiles
PS50222
348 382 35 8.795
IPR002048
SMART
SM00054
352 380 29 0.0032
IPR002048
ProSitePatterns
PS00018
361 373 13 –
IPR018247

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj2g3v0025920.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0025920.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.