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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0344980 |
| Transcript ID | Lj2g3v0344980.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: SKP1-like protein 21-like [Glycine max] gi|356520400|ref|XP_003528850.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 170 | 167 | 3.30E-125 | – | |
| PANTHER | 4 | 170 | 167 | 3.30E-125 | – | |
| Gene3D | 15 | 156 | 142 | 2.10E-32 | – | |
| SMART | 15 | 116 | 102 | 4.90E-27 | ||
| SUPERFAMILY | 16 | 80 | 65 | 5.89E-09 | ||
| Pfam | 18 | 80 | 63 | 5.40E-05 | ||
| SUPERFAMILY | 90 | 159 | 70 | 2.88E-17 | ||
| Pfam | 117 | 154 | 38 | 1.00E-12 | ||
| MobiDBLite | 206 | 247 | 42 | – | – | |
| Coils | 222 | 248 | 27 | – | – | |
| MobiDBLite | 270 | 290 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. |
Expression pattern of Lj2g3v0344980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0344980.1, powered by CORGI.
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