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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016073
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We have found 49 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.571s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0079709.1
n.a. PREDICTED: SKP1-like protein 14-like [Cicer arietinum] gi|502088225|ref|XP_004488771.1| chr0 30805828 30806358 -
2 domain predictions
1 GO term
Lj0g3v0106769.1
n.a. PREDICTED: SKP1-like protein 1A-like [Glycine max] gi|356496612|ref|XP_003517160.1| chr0 45970729 45971439 -
2 domain predictions
1 GO term
Lj0g3v0261809.1
n.a. PREDICTED: SKP1-like protein 14-like [Cicer arietinum] gi|502088225|ref|XP_004488771.1| chr0 135672175 135672669 +
2 domain predictions
1 GO term
Lj0g3v0273719.1
n.a. PREDICTED: ethylene-responsive transcription factor 5-like [Glycine max] gi|356541103|ref|XP_003539022.1| chr0 141882229 141884018 +
2 domain predictions
1 GO term
Lj0g3v0349889.1
n.a. PREDICTED: SKP1-like protein 14-like [Cicer arietinum] gi|502088225|ref|XP_004488771.1| chr0 183814823 183815317 +
2 domain predictions
1 GO term
Lj0g3v0363179.2
n.a. PREDICTED: cullin-1-like isoform X1 [Cicer arietinum] gi|502151109|ref|XP_004508282.1| chr0 191546604 191549479 +
2 domain predictions
1 GO term
Lj1g3v2671420.4
n.a. SKP1 component [Medicago truncatula] gi|124359727|gb|ABD32817.2| chr1 31115190 31121766 -
2 domain predictions
1 GO term
Lj2g3v0344980.1
n.a. PREDICTED: SKP1-like protein 21-like [Glycine max] gi|356520400|ref|XP_003528850.1| chr2 5569187 5577744 -
2 domain predictions
1 GO term
Lj2g3v1267140.1
n.a. PREDICTED: SKP1-like protein 1B isoform 2 [Vitis vinifera] gi|225457883|ref|XP_002270061.1| chr2 20136202 20137297 -
2 domain predictions
1 GO term
Lj2g3v1670950.1
n.a. PREDICTED: SKP1-like protein 1A-like [Glycine max] gi|356496612|ref|XP_003517160.1| chr2 26005444 26007115 -
2 domain predictions
1 GO term
Lj2g3v3058520.1
n.a. Skp1/Ask1-like protein [Zantedeschia hybrid cultivar] gi|47176688|gb|AAT12490.1| chr2 39335556 39337661 +
2 domain predictions
1 GO term
Lj2g3v3084320.2
n.a. NAC domain protein IPR003441 [Medicago truncatula] gi|357494187|ref|XP_003617382.1| chr2 39654148 39656195 +
2 domain predictions
1 GO term
Lj2g3v3084330.1
n.a. PREDICTED: SKP1-like protein 1A-like [Cicer arietinum] gi|502161439|ref|XP_004512165.1| chr2 39655088 39656636 +
2 domain predictions
1 GO term
Lj3g3v3236570.1
n.a. PREDICTED: transcription elongation factor B polypeptide 1 [Vitis vinifera] gi|225434792|ref|XP_002282124.1| chr3 39845014 39846898 +
2 domain predictions
1 GO term
Lj4g3v2366270.2
n.a. PREDICTED: cullin-1-like isoform X1 [Cicer arietinum] gi|502151109|ref|XP_004508282.1| chr4 32526892 32529650 +
2 domain predictions
1 GO term
Lj5g3v0186670.1
n.a. PREDICTED: SKP1-like protein 1A-like [Glycine max] gi|356496612|ref|XP_003517160.1| chr5 1631327 1632127 -
2 domain predictions
1 GO term
Lj5g3v0186680.1
n.a. PREDICTED: SKP1-like protein 1A-like [Glycine max] gi|356496612|ref|XP_003517160.1| chr5 1631510 1632064 -
2 domain predictions
1 GO term
Lj5g3v2242520.1
n.a. PREDICTED: SKP1-like protein 1A [Vitis vinifera] gi|225428047|ref|XP_002279232.1| chr5 32479390 32479977 +
2 domain predictions
1 GO term
Lj5g3v2243530.1
n.a. PREDICTED: SKP1-like protein 1A [Vitis vinifera] gi|225428047|ref|XP_002279232.1| chr5 32484469 32485062 +
2 domain predictions
1 GO term
LotjaGi1g1v0048300_LC.1
n.a. LOB domain family protein; TAIR: AT2G25700.1 SKP1-like 3; Swiss-Prot: sp|Q9SL93|ASK3_ARATH SKP1-like protein 3; TrEMBL-Plants: tr|I3SSE0|I3SSE0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0048300_LC LjG1.1_chr1 6614623 6618154 -
2 domain predictions
1 GO term
LotjaGi2g1v0297400.1
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|T2DMS9|T2DMS9_PHAVU SKP1-like protein; Found in the gene: LotjaGi2g1v0297400 LjG1.1_chr2 77229502 77230768 -
2 domain predictions
1 GO term
LotjaGi2g1v0379100.1
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|I3SWX0|I3SWX0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0379100 LjG1.1_chr2 87584290 87585617 -
2 domain predictions
1 GO term
LotjaGi2g1v0379100.2
n.a. SKP1-like protein; TAIR: AT4G35920.1 PLAC8 family protein; Swiss-Prot: sp|B6SJQ0|CNR13_MAIZE Cell number regulator 13; TrEMBL-Plants: tr|I1J8I6|I1J8I6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0379100 LjG1.1_chr2 87584290 87595466 -
2 domain predictions
1 GO term
LotjaGi2g1v0379100.3
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|I3SWX0|I3SWX0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0379100 LjG1.1_chr2 87585131 87585611 -
2 domain predictions
1 GO term
LotjaGi3g1v0299300_LC.1
n.a. Ethylene-responsive transcription factor, putative; TAIR: AT5G47230.1 ethylene responsive element binding factor 5; Swiss-Prot: sp|O80341|EF102_ARATH Ethylene-responsive transcription factor 5; TrEMBL-Plants: tr|I1LGT2|I1LGT2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0299300_LC LjG1.1_chr3 62428968 62431607 -
2 domain predictions
1 GO term
LotjaGi3g1v0344100.1
n.a. SKP1; TAIR: AT1G20140.1 SKP1-like 4; Swiss-Prot: sp|Q9LNT9|ASK4_ARATH SKP1-like protein 4; TrEMBL-Plants: tr|A0A1J7H518|A0A1J7H518_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0344100 LjG1.1_chr3 72146014 72146904 +
2 domain predictions
1 GO term
LotjaGi3g1v0344200_LC.1
n.a. SKP1; TAIR: AT2G03170.1 SKP1-like 14; Swiss-Prot: sp|O81057|ASK14_ARATH SKP1-like protein 14; TrEMBL-Plants: tr|I3SE65|I3SE65_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0344200_LC LjG1.1_chr3 72176497 72177551 +
2 domain predictions
1 GO term
LotjaGi3g1v0384100.1
n.a. SKP1 family protein; TAIR: AT3G61415.1 SKP1-like 21; Swiss-Prot: sp|Q8LF97|ASK21_ARATH SKP1-like protein 21; TrEMBL-Plants: tr|A0A0S3SZ27|A0A0S3SZ27_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0384100 LjG1.1_chr3 77846027 77855353 -
2 domain predictions
1 GO term
LotjaGi3g1v0384100.2
n.a. SKP1 family protein; TAIR: AT3G61415.1 SKP1-like 21; Swiss-Prot: sp|Q8LF97|ASK21_ARATH SKP1-like protein 21; TrEMBL-Plants: tr|I1KI94|I1KI94_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0384100 LjG1.1_chr3 77847767 77852979 -
2 domain predictions
1 GO term
LotjaGi3g1v0384100.3
n.a. SKP1 family protein; TAIR: AT3G61415.1 SKP1-like 21; Swiss-Prot: sp|Q8LF97|ASK21_ARATH SKP1-like protein 21; TrEMBL-Plants: tr|I1KI94|I1KI94_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0384100 LjG1.1_chr3 77847812 77852979 -
2 domain predictions
1 GO term
LotjaGi3g1v0384100.4
n.a. SKP1 family protein; TAIR: AT3G61415.1 SKP1-like 21; Swiss-Prot: sp|Q8LF97|ASK21_ARATH SKP1-like protein 21; TrEMBL-Plants: tr|K7KC10|K7KC10_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0384100 LjG1.1_chr3 77847829 77852975 -
2 domain predictions
1 GO term
LotjaGi3g1v0384100.5
n.a. SKP1 family protein; TAIR: AT2G45950.1 SKP1-like 20; Swiss-Prot: sp|Q8LF97|ASK21_ARATH SKP1-like protein 21; TrEMBL-Plants: tr|I1KI94|I1KI94_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0384100 LjG1.1_chr3 77847829 77852975 -
2 domain predictions
1 GO term
LotjaGi3g1v0384100.6
n.a. SKP1 family protein; TAIR: AT3G61415.2 SKP1-like 21; Swiss-Prot: sp|Q8LF97|ASK21_ARATH SKP1-like protein 21; TrEMBL-Plants: tr|I1KI94|I1KI94_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0384100 LjG1.1_chr3 77852179 77852976 -
2 domain predictions
1 GO term
LotjaGi3g1v0491300.1
n.a. Transcription elongation factor B polypeptide 1; TAIR: AT5G59140.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q2KII4|ELOC_BOVIN Elongin-C; TrEMBL-Plants: tr|A0A0S3SG76|A0A0S3SG76_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0491300 LjG1.1_chr3 90916050 90917589 +
2 domain predictions
1 GO term
LotjaGi3g1v0491300.2
n.a. Transcription elongation factor B polypeptide 1; TAIR: AT5G59140.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q2KII4|ELOC_BOVIN Elongin-C; TrEMBL-Plants: tr|A0A0S3SG76|A0A0S3SG76_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0491300 LjG1.1_chr3 90916050 90917589 +
2 domain predictions
1 GO term
LotjaGi3g1v0491300.3
n.a. Transcription elongation factor B polypeptide 1; TAIR: AT5G59140.1 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q2KII4|ELOC_BOVIN Elongin-C; TrEMBL-Plants: tr|A0A0S3SG76|A0A0S3SG76_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0491300 LjG1.1_chr3 90916050 90917589 +
2 domain predictions
1 GO term
LotjaGi4g1v0131700.1
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|A0A1J7G3F5|A0A1J7G3F5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0131700 LjG1.1_chr4 19272074 19274098 +
2 domain predictions
1 GO term
LotjaGi4g1v0232700_LC.1
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|F6GZT1|F6GZT1_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0232700_LC LjG1.1_chr4 54389436 54389900 +
2 domain predictions
1 GO term
LotjaGi4g1v0343500.1
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SL73|I3SL73_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0343500 LjG1.1_chr4 72328181 72331712 -
2 domain predictions
1 GO term
LotjaGi4g1v0343500.2
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SL73|I3SL73_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0343500 LjG1.1_chr4 72328323 72331676 -
2 domain predictions
1 GO term
LotjaGi4g1v0344000.1
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SL73|I3SL73_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344000 LjG1.1_chr4 72376367 72386661 +
2 domain predictions
1 GO term
LotjaGi4g1v0344100.1
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344100 LjG1.1_chr4 72395807 72402669 +
2 domain predictions
1 GO term
LotjaGi4g1v0344100.2
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344100 LjG1.1_chr4 72395844 72402259 +
2 domain predictions
1 GO term
LotjaGi4g1v0344200.1
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344200 LjG1.1_chr4 72404321 72410983 +
2 domain predictions
1 GO term
LotjaGi4g1v0344200.2
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344200 LjG1.1_chr4 72404347 72410887 +
2 domain predictions
1 GO term
LotjaGi4g1v0344200.3
n.a. Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344200 LjG1.1_chr4 72404347 72410887 +
2 domain predictions
1 GO term
LotjaGi5g1v0006400.1
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|I3SES0|I3SES0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0006400 LjG1.1_chr5 1500657 1501843 +
2 domain predictions
1 GO term
LotjaGi5g1v0348400.1
n.a. SKP1-like protein; TAIR: AT2G25700.1 SKP1-like 3; Swiss-Prot: sp|Q9SL93|ASK3_ARATH SKP1-like protein 3; TrEMBL-Plants: tr|A0A076JVB0|A0A076JVB0_9ROSA S-phase kinase-associated protein 1-like protein 3; Found in the gene: LotjaGi5g1v0348400 LjG1.1_chr5 66432017 66432769 +
2 domain predictions
1 GO term
LotjaGi5g1v0348500.1
n.a. SKP1-like protein; TAIR: AT2G25700.1 SKP1-like 3; Swiss-Prot: sp|Q9SL93|ASK3_ARATH SKP1-like protein 3; TrEMBL-Plants: tr|A0A076JVB0|A0A076JVB0_9ROSA S-phase kinase-associated protein 1-like protein 3; Found in the gene: LotjaGi5g1v0348500 LjG1.1_chr5 66438085 66438942 +
2 domain predictions
1 GO term