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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0371570 |
| Transcript ID | Lj2g3v0371570.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357449185|ref|XP_003594869.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | – | – | |
| SignalP | 1 | 13 | 13 | – | – | |
| SignalP | 1 | 20 | 20 | – | – | |
| Phobius | 1 | 13 | 13 | – | – | |
| Phobius | 2 | 9 | 8 | – | – | |
| Phobius | 10 | 13 | 4 | – | – | |
| Phobius | 14 | 431 | 418 | – | – | |
| PANTHER | 24 | 427 | 404 | 1.20E-216 | – | |
| PANTHER | 24 | 427 | 404 | 1.20E-216 | – | |
| SUPERFAMILY | 26 | 215 | 190 | 3.14E-05 | – | |
| Pfam | 39 | 70 | 32 | 9.20E-09 | ||
| ProSiteProfiles | 43 | 77 | 35 | 10.665 | ||
| TIGRFAM | 45 | 71 | 27 | 2.20E-05 | ||
| Gene3D | 56 | 165 | 110 | 1.60E-06 | ||
| Pfam | 75 | 106 | 32 | 1.60E-10 | ||
| ProSiteProfiles | 78 | 112 | 35 | 11.619 | ||
| TIGRFAM | 80 | 114 | 35 | 1.80E-09 | ||
| Pfam | 112 | 161 | 50 | 7.30E-19 | ||
| ProSiteProfiles | 113 | 147 | 35 | 12.167 | ||
| TIGRFAM | 115 | 149 | 35 | 5.20E-08 | ||
| ProSiteProfiles | 148 | 182 | 35 | 13.285 | ||
| TIGRFAM | 150 | 183 | 34 | 7.90E-09 | ||
| Pfam | 182 | 231 | 50 | 6.00E-17 | ||
| ProSiteProfiles | 183 | 217 | 35 | 11.126 | ||
| TIGRFAM | 185 | 219 | 35 | 2.50E-07 | ||
| ProSiteProfiles | 218 | 252 | 35 | 13.099 | ||
| TIGRFAM | 221 | 254 | 34 | 3.10E-11 | ||
| Pfam | 249 | 280 | 32 | 2.60E-11 | ||
| ProSiteProfiles | 253 | 287 | 35 | 10.731 | ||
| TIGRFAM | 255 | 284 | 30 | 1.60E-07 | ||
| ProSiteProfiles | 288 | 322 | 35 | 13.066 | ||
| Pfam | 288 | 336 | 49 | 4.90E-18 | ||
| TIGRFAM | 290 | 323 | 34 | 1.40E-08 | ||
| Gene3D | 291 | 420 | 130 | 1.60E-06 | ||
| ProSiteProfiles | 323 | 357 | 35 | 12.803 | ||
| TIGRFAM | 325 | 358 | 34 | 2.50E-07 | ||
| Pfam | 358 | 404 | 47 | 1.40E-13 | ||
| ProSiteProfiles | 358 | 392 | 35 | 11.838 | ||
| TIGRFAM | 360 | 393 | 34 | 2.50E-08 | ||
| ProSiteProfiles | 393 | 427 | 35 | 10.019 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v0371570.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0371570.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.