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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0392950 |
| Transcript ID | Lj2g3v0392950.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 1 [Glycine max] gi|356559788|ref|XP_003548179.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 328 | 328 | 6.90E-173 | – | |
| PANTHER | 1 | 328 | 328 | 6.90E-173 | ||
| SUPERFAMILY | 5 | 326 | 322 | 4.85E-107 | ||
| Gene3D | 9 | 252 | 244 | 3.00E-28 | ||
| Pfam | 22 | 188 | 167 | 7.20E-57 | ||
| Pfam | 242 | 326 | 85 | 2.20E-08 | ||
| SMART | 242 | 328 | 87 | 9.90E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | MRNA cleavage and polyadenylation specificity factor complex | A multisubunit complex that binds to the canonical AAUAAA hexamer and to U-rich upstream sequence elements on the pre-mRNA, thereby stimulating the otherwise weakly active and nonspecific polymerase to elongate efficiently RNAs containing a poly(A) signal. | ||
| Biological process | MRNA polyadenylation | The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript. | ||
| Biological process | MRNA cleavage | Any process in which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner. |
Expression pattern of Lj2g3v0392950.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0392950.1, powered by CORGI.
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