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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0425390 |
| Transcript ID | Lj2g3v0425390.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163324|ref|XP_004512803.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | – | – | |
| Phobius | 1 | 14 | 14 | – | – | |
| PANTHER | 2 | 534 | 533 | 3.00E-269 | – | |
| PANTHER | 2 | 534 | 533 | 3.00E-269 | – | |
| Phobius | 15 | 23 | 9 | – | – | |
| ProSiteProfiles | 18 | 53 | 36 | 5.283 | ||
| Phobius | 24 | 28 | 5 | – | – | |
| Phobius | 29 | 534 | 506 | – | – | |
| Gene3D | 35 | 186 | 152 | 2.20E-06 | ||
| ProSiteProfiles | 54 | 88 | 35 | 7.465 | ||
| Pfam | 88 | 136 | 49 | 2.30E-14 | ||
| ProSiteProfiles | 89 | 123 | 35 | 11.444 | ||
| TIGRFAM | 91 | 125 | 35 | 5.10E-07 | ||
| ProSiteProfiles | 124 | 158 | 35 | 10.907 | ||
| TIGRFAM | 126 | 159 | 34 | 2.10E-06 | ||
| Pfam | 155 | 186 | 32 | 1.20E-08 | ||
| ProSiteProfiles | 159 | 193 | 35 | 10.665 | ||
| TIGRFAM | 161 | 188 | 28 | 2.60E-05 | ||
| Pfam | 193 | 241 | 49 | 2.70E-15 | ||
| ProSiteProfiles | 194 | 228 | 35 | 11.093 | ||
| TIGRFAM | 196 | 229 | 34 | 8.10E-08 | ||
| ProSiteProfiles | 229 | 263 | 35 | 11.29 | ||
| TIGRFAM | 231 | 263 | 33 | 4.00E-06 | ||
| ProSiteProfiles | 264 | 298 | 35 | 11.488 | ||
| Pfam | 265 | 311 | 47 | 6.20E-14 | ||
| TIGRFAM | 267 | 300 | 34 | 9.20E-09 | ||
| ProSiteProfiles | 299 | 333 | 35 | 11.762 | ||
| TIGRFAM | 301 | 335 | 35 | 3.70E-06 | ||
| Pfam | 333 | 382 | 50 | 2.30E-19 | ||
| ProSiteProfiles | 334 | 368 | 35 | 13.187 | ||
| TIGRFAM | 337 | 370 | 34 | 9.50E-12 | ||
| ProSiteProfiles | 369 | 403 | 35 | 11.893 | ||
| TIGRFAM | 371 | 401 | 31 | 1.00E-08 | ||
| Gene3D | 394 | 465 | 72 | 2.20E-06 | ||
| Pfam | 404 | 452 | 49 | 1.10E-17 | ||
| ProSiteProfiles | 404 | 438 | 35 | 12.726 | ||
| TIGRFAM | 406 | 439 | 34 | 1.30E-07 | ||
| ProSiteProfiles | 439 | 473 | 35 | 11.345 | ||
| TIGRFAM | 441 | 474 | 34 | 1.90E-05 | ||
| Pfam | 474 | 520 | 47 | 1.20E-11 | ||
| ProSiteProfiles | 474 | 508 | 35 | 12.156 | ||
| TIGRFAM | 477 | 509 | 33 | 8.00E-08 | ||
| ProSiteProfiles | 509 | 534 | 26 | 7.432 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v0425390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0425390.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.