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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0489020 |
| Transcript ID | Lj2g3v0489020.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g66520-like [Glycine max] gi|356561762|ref|XP_003549147.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 493 | 493 | 0 | – | |
| PANTHER | 1 | 493 | 493 | 0 | – | |
| ProSiteProfiles | 78 | 114 | 37 | 6.928 | ||
| ProSiteProfiles | 150 | 180 | 31 | 6.708 | ||
| Pfam | 153 | 175 | 23 | 0.66 | ||
| ProSiteProfiles | 181 | 215 | 35 | 11.926 | ||
| SUPERFAMILY | 183 | 249 | 67 | 9.87E-06 | ||
| TIGRFAM | 183 | 214 | 32 | 5.10E-08 | ||
| Gene3D | 183 | 345 | 163 | 5.10E-10 | ||
| Pfam | 212 | 258 | 47 | 2.10E-09 | ||
| TIGRFAM | 214 | 248 | 35 | 1.40E-06 | ||
| ProSiteProfiles | 216 | 246 | 31 | 7.837 | ||
| ProSiteProfiles | 282 | 312 | 31 | 6.5 | ||
| Pfam | 288 | 307 | 20 | 1.1 | ||
| ProSiteProfiles | 314 | 348 | 35 | 11.159 | ||
| TIGRFAM | 318 | 349 | 32 | 1.30E-07 | ||
| Pfam | 318 | 361 | 44 | 3.10E-12 | ||
| ProSiteProfiles | 349 | 384 | 36 | 6.785 | ||
| ProSiteProfiles | 385 | 415 | 31 | 6.884 | ||
| Pfam | 388 | 412 | 25 | 0.021 | ||
| Gene3D | 434 | 472 | 39 | 5.10E-10 | ||
| SUPERFAMILY | 435 | 477 | 43 | 9.87E-06 | ||
| Pfam | 488 | 613 | 126 | 2.80E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj2g3v0489020.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0489020.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.