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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0547900 |
| Transcript ID | Lj2g3v0547900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|357498959|ref|XP_003619768.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 131 | 125 | 1.40E-105 | – | |
| PANTHER | 7 | 131 | 125 | 1.40E-105 | – | |
| Gene3D | 27 | 122 | 96 | 7.90E-24 | ||
| SUPERFAMILY | 32 | 118 | 87 | 1.92E-21 | ||
| Pfam | 56 | 114 | 59 | 3.10E-12 | ||
| ProSiteProfiles | 168 | 294 | 127 | 27.178 | ||
| SMART | 168 | 271 | 104 | 4.90E-33 | ||
| SUPERFAMILY | 170 | 292 | 123 | 3.01E-22 | ||
| Pfam | 173 | 269 | 97 | 1.40E-13 | ||
| PANTHER | 174 | 282 | 109 | 1.40E-105 | – | |
| PANTHER | 174 | 282 | 109 | 1.40E-105 | – | |
| Coils | 295 | 315 | 21 | – | – | |
| PANTHER | 305 | 514 | 210 | 1.40E-105 | – | |
| PANTHER | 305 | 514 | 210 | 1.40E-105 | – | |
| MobiDBLite | 418 | 444 | 27 | – | – | |
| PANTHER | 690 | 751 | 62 | 1.40E-105 | – | |
| SUPERFAMILY | 690 | 748 | 59 | 3.01E-17 | ||
| PANTHER | 690 | 751 | 62 | 1.40E-105 | – | |
| CDD | 693 | 750 | 58 | 2.28E-14 | ||
| ProSiteProfiles | 693 | 747 | 55 | 14.843 | ||
| SMART | 694 | 749 | 56 | 7.00E-10 | ||
| Pfam | 695 | 737 | 43 | 9.10E-11 | ||
| Gene3D | 695 | 748 | 54 | 3.50E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v0547900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0547900.2, powered by CORGI.
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