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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0560050 |
| Transcript ID | Lj2g3v0560050.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like [Glycine max] gi|356561794|ref|XP_003549163.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 255 | 243 | 0 | – | |
| PANTHER | 13 | 255 | 243 | 0 | – | |
| ProSiteProfiles | 14 | 48 | 35 | 7.487 | ||
| Pfam | 17 | 46 | 30 | 0.92 | ||
| ProSiteProfiles | 49 | 83 | 35 | 5.941 | ||
| ProSiteProfiles | 84 | 114 | 31 | 8.166 | ||
| Gene3D | 114 | 149 | 36 | 4.70E-12 | ||
| ProSiteProfiles | 115 | 149 | 35 | 11.992 | ||
| Pfam | 115 | 162 | 48 | 1.90E-08 | ||
| TIGRFAM | 117 | 150 | 34 | 6.50E-08 | ||
| ProSiteProfiles | 189 | 219 | 31 | 8.21 | ||
| TIGRFAM | 194 | 221 | 28 | 5.30E-04 | ||
| ProSiteProfiles | 220 | 254 | 35 | 9.723 | ||
| Pfam | 220 | 266 | 47 | 1.20E-09 | ||
| TIGRFAM | 222 | 255 | 34 | 9.50E-06 | ||
| ProSiteProfiles | 255 | 289 | 35 | 6.665 | ||
| ProSiteProfiles | 290 | 320 | 31 | 5.13 | ||
| PANTHER | 291 | 601 | 311 | 0 | – | |
| PANTHER | 291 | 601 | 311 | 0 | – | |
| Pfam | 320 | 368 | 49 | 8.50E-10 | ||
| Gene3D | 320 | 453 | 134 | 4.70E-12 | ||
| ProSiteProfiles | 321 | 355 | 35 | 12.704 | ||
| TIGRFAM | 324 | 356 | 33 | 3.90E-08 | ||
| ProSiteProfiles | 356 | 390 | 35 | 5.875 | ||
| ProSiteProfiles | 391 | 421 | 31 | 7.815 | ||
| Pfam | 396 | 421 | 26 | 0.031 | ||
| SUPERFAMILY | 402 | 446 | 45 | 3.80E-05 | ||
| ProSiteProfiles | 422 | 457 | 36 | 9.021 | ||
| TIGRFAM | 425 | 459 | 35 | 1.10E-05 | ||
| Pfam | 425 | 450 | 26 | 2.60E-06 | ||
| ProSiteProfiles | 458 | 493 | 36 | 8.769 | ||
| TIGRFAM | 460 | 494 | 35 | 1.10E-04 | ||
| Pfam | 461 | 487 | 27 | 0.0033 | ||
| ProSiteProfiles | 494 | 524 | 31 | 5.503 | ||
| Gene3D | 522 | 580 | 59 | 4.70E-12 | ||
| SUPERFAMILY | 541 | 580 | 40 | 3.80E-05 | ||
| ProSiteProfiles | 560 | 594 | 35 | 5.514 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v0560050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0560050.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.