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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0571350 |
| Transcript ID | Lj2g3v0571350.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial-like [Glycine max] gi|356555295|ref|XP_003545969.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 21 | 21 | – | – | |
| Phobius | 1 | 21 | 21 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 4 | 14 | 11 | – | – | |
| Phobius | 15 | 21 | 7 | – | – | |
| Phobius | 22 | 620 | 599 | – | – | |
| PANTHER | 36 | 491 | 456 | 0 | – | |
| PANTHER | 36 | 491 | 456 | 0 | – | |
| ProSiteProfiles | 79 | 109 | 31 | 6.04 | ||
| ProSiteProfiles | 110 | 140 | 31 | 9.12 | ||
| Pfam | 112 | 139 | 28 | 3.00E-05 | ||
| TIGRFAM | 112 | 144 | 33 | 7.30E-04 | ||
| ProSiteProfiles | 146 | 180 | 35 | 5.842 | ||
| ProSiteProfiles | 181 | 211 | 31 | 7.52 | ||
| Pfam | 186 | 211 | 26 | 3.40E-04 | ||
| Gene3D | 201 | 243 | 43 | 3.40E-04 | ||
| Pfam | 212 | 258 | 47 | 6.00E-08 | ||
| ProSiteProfiles | 212 | 246 | 35 | 11.389 | ||
| TIGRFAM | 214 | 248 | 35 | 6.90E-07 | ||
| Gene3D | 281 | 302 | 22 | 3.40E-04 | ||
| ProSiteProfiles | 282 | 312 | 31 | 6.423 | ||
| Pfam | 312 | 360 | 49 | 6.80E-08 | ||
| ProSiteProfiles | 313 | 347 | 35 | 10.216 | ||
| TIGRFAM | 315 | 348 | 34 | 5.30E-05 | ||
| ProSiteProfiles | 348 | 383 | 36 | 7.87 | ||
| ProSiteProfiles | 384 | 414 | 31 | 6.774 | ||
| Pfam | 387 | 411 | 25 | 0.029 | ||
| Gene3D | 437 | 471 | 35 | 3.40E-04 | ||
| ProSiteProfiles | 450 | 480 | 31 | 6.27 | ||
| Pfam | 486 | 609 | 124 | 2.40E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj2g3v0571350.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0571350.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.